Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS28Q9UK41 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS28Q9UK41 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
VPS28Q9UK41 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS28Q9UK41 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS28Q9UK41 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS28Q9UK41 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS28Q9UK41 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS28Q9UK41 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS28Q9UK41 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS28Q9UK41 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS28Q9UK41 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.54■□□□□ 0.72
VPS28Q9UK41 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
VPS28Q9UK41 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.54■□□□□ 0.72
VPS28Q9UK41 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS28Q9UK41 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
VPS28Q9UK41 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.54■□□□□ 0.72
VPS28Q9UK41 TSPY14P-201ENST00000303979 915 ntBASIC19.54■□□□□ 0.72
VPS28Q9UK41 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS28Q9UK41 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.54■□□□□ 0.72
VPS28Q9UK41 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS28Q9UK41 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.54■□□□□ 0.72
VPS28Q9UK41 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.54■□□□□ 0.72
VPS28Q9UK41 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
VPS28Q9UK41 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.54■□□□□ 0.72
VPS28Q9UK41 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS28Q9UK41 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS28Q9UK41 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
VPS28Q9UK41 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS28Q9UK41 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS28Q9UK41 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.54■□□□□ 0.72
VPS28Q9UK41 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS28Q9UK41 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
VPS28Q9UK41 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS28Q9UK41 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS28Q9UK41 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
VPS28Q9UK41 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.53■□□□□ 0.72
VPS28Q9UK41 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.53■□□□□ 0.72
VPS28Q9UK41 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS28Q9UK41 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.53■□□□□ 0.72
VPS28Q9UK41 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS28Q9UK41 TSPY23P-201ENST00000440136 739 ntBASIC19.53■□□□□ 0.72
VPS28Q9UK41 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.53■□□□□ 0.72
VPS28Q9UK41 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC19.53■□□□□ 0.72
VPS28Q9UK41 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS28Q9UK41 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS28Q9UK41 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.53■□□□□ 0.72
VPS28Q9UK41 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS28Q9UK41 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.53■□□□□ 0.72
VPS28Q9UK41 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
VPS28Q9UK41 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS28Q9UK41 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.52■□□□□ 0.72
VPS28Q9UK41 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VPS28Q9UK41 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS28Q9UK41 SLC25A1P2-201ENST00000430693 912 ntBASIC19.52■□□□□ 0.72
VPS28Q9UK41 CCR12P-201ENST00000446203 998 ntBASIC19.52■□□□□ 0.72
VPS28Q9UK41 AC128688.1-201ENST00000487626 519 ntBASIC19.52■□□□□ 0.72
VPS28Q9UK41 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS28Q9UK41 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.52■□□□□ 0.72
VPS28Q9UK41 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS28Q9UK41 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS28Q9UK41 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.52■□□□□ 0.72
VPS28Q9UK41 AC005363.2-201ENST00000618631 242 ntBASIC19.52■□□□□ 0.72
VPS28Q9UK41 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS28Q9UK41 AC116562.4-202ENST00000641738 218 ntBASIC19.52■□□□□ 0.72
VPS28Q9UK41 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VPS28Q9UK41 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS28Q9UK41 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS28Q9UK41 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS28Q9UK41 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
VPS28Q9UK41 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
VPS28Q9UK41 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS28Q9UK41 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
VPS28Q9UK41 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS28Q9UK41 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS28Q9UK41 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.51■□□□□ 0.71
VPS28Q9UK41 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS28Q9UK41 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS28Q9UK41 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS28Q9UK41 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS28Q9UK41 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS28Q9UK41 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS28Q9UK41 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
VPS28Q9UK41 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
VPS28Q9UK41 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
VPS28Q9UK41 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.51■□□□□ 0.71
VPS28Q9UK41 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
VPS28Q9UK41 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS28Q9UK41 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS28Q9UK41 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
VPS28Q9UK41 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
VPS28Q9UK41 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS28Q9UK41 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS28Q9UK41 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS28Q9UK41 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS28Q9UK41 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS28Q9UK41 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.5■□□□□ 0.71
VPS28Q9UK41 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
VPS28Q9UK41 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS28Q9UK41 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms