Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 AC069148.1-201ENST00000608741 768 ntBASIC22.45■■□□□ 1.18
DDX4Q9NQI0 CLN6-214ENST00000636314 442 ntTSL 3 BASIC22.45■■□□□ 1.18
DDX4Q9NQI0 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC22.45■■□□□ 1.18
DDX4Q9NQI0 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
DDX4Q9NQI0 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
DDX4Q9NQI0 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC22.45■■□□□ 1.18
DDX4Q9NQI0 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
DDX4Q9NQI0 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC22.45■■□□□ 1.18
DDX4Q9NQI0 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
DDX4Q9NQI0 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
DDX4Q9NQI0 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
DDX4Q9NQI0 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
DDX4Q9NQI0 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC22.44■■□□□ 1.18
DDX4Q9NQI0 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC22.44■■□□□ 1.18
DDX4Q9NQI0 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
DDX4Q9NQI0 SEC1P-202ENST00000473944 940 ntBASIC22.44■■□□□ 1.18
DDX4Q9NQI0 NDUFV2-AS1-203ENST00000608008 779 ntBASIC22.44■■□□□ 1.18
DDX4Q9NQI0 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC22.44■■□□□ 1.18
DDX4Q9NQI0 AL158211.5-201ENST00000623583 2518 ntBASIC22.43■■□□□ 1.18
DDX4Q9NQI0 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
DDX4Q9NQI0 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC22.43■■□□□ 1.18
DDX4Q9NQI0 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC22.43■■□□□ 1.18
DDX4Q9NQI0 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
DDX4Q9NQI0 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
DDX4Q9NQI0 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
DDX4Q9NQI0 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
DDX4Q9NQI0 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC22.43■■□□□ 1.18
DDX4Q9NQI0 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC22.43■■□□□ 1.18
DDX4Q9NQI0 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
DDX4Q9NQI0 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
DDX4Q9NQI0 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC22.43■■□□□ 1.18
DDX4Q9NQI0 DUSP5P1-201ENST00000441325 1139 ntBASIC22.43■■□□□ 1.18
DDX4Q9NQI0 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC22.43■■□□□ 1.18
DDX4Q9NQI0 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC22.43■■□□□ 1.18
DDX4Q9NQI0 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
DDX4Q9NQI0 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC22.43■■□□□ 1.18
DDX4Q9NQI0 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC22.43■■□□□ 1.18
DDX4Q9NQI0 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
DDX4Q9NQI0 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
DDX4Q9NQI0 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC22.43■■□□□ 1.18
DDX4Q9NQI0 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
DDX4Q9NQI0 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
DDX4Q9NQI0 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
DDX4Q9NQI0 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
DDX4Q9NQI0 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
DDX4Q9NQI0 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
DDX4Q9NQI0 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
DDX4Q9NQI0 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
DDX4Q9NQI0 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC22.42■■□□□ 1.18
DDX4Q9NQI0 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
DDX4Q9NQI0 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC22.42■■□□□ 1.18
DDX4Q9NQI0 AL121894.2-201ENST00000602977 491 ntBASIC22.42■■□□□ 1.18
DDX4Q9NQI0 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
DDX4Q9NQI0 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
DDX4Q9NQI0 AC079602.3-201ENST00000623931 403 ntBASIC22.42■■□□□ 1.18
DDX4Q9NQI0 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC22.42■■□□□ 1.18
DDX4Q9NQI0 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
DDX4Q9NQI0 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
DDX4Q9NQI0 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC22.42■■□□□ 1.18
DDX4Q9NQI0 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
DDX4Q9NQI0 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
DDX4Q9NQI0 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
DDX4Q9NQI0 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC22.42■■□□□ 1.18
DDX4Q9NQI0 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
DDX4Q9NQI0 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC22.41■■□□□ 1.18
DDX4Q9NQI0 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
DDX4Q9NQI0 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC22.41■■□□□ 1.18
DDX4Q9NQI0 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC22.41■■□□□ 1.18
DDX4Q9NQI0 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
DDX4Q9NQI0 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
DDX4Q9NQI0 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
DDX4Q9NQI0 KRT18P48-201ENST00000434763 852 ntBASIC22.41■■□□□ 1.18
DDX4Q9NQI0 HCG4P8-203ENST00000443049 980 ntBASIC22.41■■□□□ 1.18
DDX4Q9NQI0 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
DDX4Q9NQI0 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
DDX4Q9NQI0 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
DDX4Q9NQI0 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
DDX4Q9NQI0 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
DDX4Q9NQI0 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
DDX4Q9NQI0 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
DDX4Q9NQI0 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
DDX4Q9NQI0 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
DDX4Q9NQI0 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC22.41■■□□□ 1.18
DDX4Q9NQI0 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
DDX4Q9NQI0 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 KRT126P-201ENST00000549467 1181 ntBASIC22.4■■□□□ 1.18
DDX4Q9NQI0 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC22.4■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms