Protein–RNA interactions for Protein: Q99958

FOXC2, Forkhead box protein C2, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC2Q99958 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
FOXC2Q99958 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC15.99■□□□□ 0.15
FOXC2Q99958 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXC2Q99958 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC15.99■□□□□ 0.15
FOXC2Q99958 AC092720.2-201ENST00000602388 1665 ntBASIC15.99■□□□□ 0.15
FOXC2Q99958 PLK5-205ENST00000642079 1969 ntBASIC15.98■□□□□ 0.15
FOXC2Q99958 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
FOXC2Q99958 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXC2Q99958 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXC2Q99958 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXC2Q99958 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXC2Q99958 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXC2Q99958 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC15.98■□□□□ 0.15
FOXC2Q99958 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXC2Q99958 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXC2Q99958 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXC2Q99958 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXC2Q99958 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC15.98■□□□□ 0.15
FOXC2Q99958 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXC2Q99958 HLA-F-220ENST00000434407 884 ntBASIC15.98■□□□□ 0.15
FOXC2Q99958 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
FOXC2Q99958 TOB2P1-201ENST00000469761 992 ntBASIC15.98■□□□□ 0.15
FOXC2Q99958 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
FOXC2Q99958 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXC2Q99958 AC064862.7-201ENST00000604520 867 ntBASIC15.98■□□□□ 0.15
FOXC2Q99958 AC024243.1-201ENST00000609234 778 ntBASIC15.98■□□□□ 0.15
FOXC2Q99958 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXC2Q99958 AP001271.2-201ENST00000624018 1556 ntBASIC15.98■□□□□ 0.15
FOXC2Q99958 VPS51-217ENST00000639871 243 ntTSL 5 BASIC15.98■□□□□ 0.15
FOXC2Q99958 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXC2Q99958 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXC2Q99958 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXC2Q99958 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXC2Q99958 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
FOXC2Q99958 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC15.97■□□□□ 0.15
FOXC2Q99958 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXC2Q99958 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXC2Q99958 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC15.97■□□□□ 0.15
FOXC2Q99958 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXC2Q99958 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXC2Q99958 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXC2Q99958 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXC2Q99958 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXC2Q99958 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXC2Q99958 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXC2Q99958 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC15.97■□□□□ 0.15
FOXC2Q99958 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
FOXC2Q99958 MIR662-201ENST00000384847 95 ntBASIC15.97■□□□□ 0.15
FOXC2Q99958 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC15.97■□□□□ 0.15
FOXC2Q99958 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXC2Q99958 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC15.97■□□□□ 0.15
FOXC2Q99958 AC104819.1-201ENST00000504587 486 ntBASIC15.97■□□□□ 0.15
FOXC2Q99958 AL353801.3-201ENST00000609898 542 ntBASIC15.97■□□□□ 0.15
FOXC2Q99958 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC15.97■□□□□ 0.15
FOXC2Q99958 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXC2Q99958 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXC2Q99958 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXC2Q99958 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXC2Q99958 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXC2Q99958 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXC2Q99958 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
FOXC2Q99958 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXC2Q99958 FBXW4P1-201ENST00000426721 2239 ntBASIC15.96■□□□□ 0.15
FOXC2Q99958 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXC2Q99958 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
FOXC2Q99958 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXC2Q99958 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
FOXC2Q99958 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC15.96■□□□□ 0.15
FOXC2Q99958 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC15.96■□□□□ 0.15
FOXC2Q99958 MIR574-201ENST00000385209 96 ntBASIC15.96■□□□□ 0.15
FOXC2Q99958 GRAMD4P1-201ENST00000435181 1110 ntBASIC15.96■□□□□ 0.15
FOXC2Q99958 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC15.96■□□□□ 0.15
FOXC2Q99958 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
FOXC2Q99958 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
FOXC2Q99958 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC15.96■□□□□ 0.15
FOXC2Q99958 TBC1D3P2-202ENST00000577902 1649 ntBASIC15.96■□□□□ 0.15
FOXC2Q99958 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
FOXC2Q99958 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
FOXC2Q99958 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
FOXC2Q99958 AC073130.3-201ENST00000624389 2278 ntBASIC15.96■□□□□ 0.14
FOXC2Q99958 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC15.95■□□□□ 0.14
FOXC2Q99958 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXC2Q99958 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.95■□□□□ 0.14
FOXC2Q99958 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
FOXC2Q99958 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXC2Q99958 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
FOXC2Q99958 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXC2Q99958 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXC2Q99958 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
FOXC2Q99958 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXC2Q99958 DFFB-203ENST00000341385 572 ntTSL 5 BASIC15.95■□□□□ 0.14
FOXC2Q99958 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.95■□□□□ 0.14
FOXC2Q99958 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.95■□□□□ 0.14
FOXC2Q99958 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXC2Q99958 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXC2Q99958 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
FOXC2Q99958 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC15.95■□□□□ 0.14
FOXC2Q99958 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXC2Q99958 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXC2Q99958 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms