Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.86■□□□□ 0.61
VPS35Q96QK1 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
VPS35Q96QK1 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
VPS35Q96QK1 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS35Q96QK1 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
VPS35Q96QK1 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS35Q96QK1 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS35Q96QK1 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS35Q96QK1 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS35Q96QK1 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.86■□□□□ 0.61
VPS35Q96QK1 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS35Q96QK1 IRX1P1-201ENST00000438849 1838 ntBASIC18.86■□□□□ 0.61
VPS35Q96QK1 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
VPS35Q96QK1 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
VPS35Q96QK1 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS35Q96QK1 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS35Q96QK1 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS35Q96QK1 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
VPS35Q96QK1 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS35Q96QK1 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS35Q96QK1 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
VPS35Q96QK1 TSPY14P-201ENST00000303979 915 ntBASIC18.85■□□□□ 0.61
VPS35Q96QK1 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS35Q96QK1 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS35Q96QK1 SLC25A1P2-201ENST00000430693 912 ntBASIC18.85■□□□□ 0.61
VPS35Q96QK1 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS35Q96QK1 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS35Q96QK1 NAPSB-206ENST00000562112 1266 ntBASIC18.85■□□□□ 0.61
VPS35Q96QK1 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS35Q96QK1 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.85■□□□□ 0.61
VPS35Q96QK1 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS35Q96QK1 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS35Q96QK1 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.85■□□□□ 0.61
VPS35Q96QK1 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS35Q96QK1 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS35Q96QK1 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS35Q96QK1 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS35Q96QK1 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS35Q96QK1 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS35Q96QK1 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS35Q96QK1 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS35Q96QK1 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS35Q96QK1 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS35Q96QK1 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.84■□□□□ 0.61
VPS35Q96QK1 CYP2D8P-201ENST00000433633 1490 ntBASIC18.84■□□□□ 0.61
VPS35Q96QK1 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS35Q96QK1 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS35Q96QK1 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS35Q96QK1 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS35Q96QK1 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS35Q96QK1 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS35Q96QK1 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.84■□□□□ 0.61
VPS35Q96QK1 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS35Q96QK1 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.84■□□□□ 0.61
VPS35Q96QK1 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
VPS35Q96QK1 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS35Q96QK1 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS35Q96QK1 AC010947.1-201ENST00000623454 693 ntBASIC18.84■□□□□ 0.61
VPS35Q96QK1 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS35Q96QK1 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS35Q96QK1 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS35Q96QK1 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS35Q96QK1 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS35Q96QK1 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS35Q96QK1 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
VPS35Q96QK1 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
VPS35Q96QK1 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS35Q96QK1 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS35Q96QK1 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.83■□□□□ 0.61
VPS35Q96QK1 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.83■□□□□ 0.61
VPS35Q96QK1 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS35Q96QK1 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.83■□□□□ 0.61
VPS35Q96QK1 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VPS35Q96QK1 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VPS35Q96QK1 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.83■□□□□ 0.61
VPS35Q96QK1 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VPS35Q96QK1 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS35Q96QK1 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS35Q96QK1 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS35Q96QK1 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.83■□□□□ 0.6
VPS35Q96QK1 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
VPS35Q96QK1 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS35Q96QK1 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS35Q96QK1 EGLN1P1-201ENST00000531623 762 ntBASIC18.83■□□□□ 0.6
VPS35Q96QK1 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS35Q96QK1 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS35Q96QK1 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS35Q96QK1 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS35Q96QK1 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS35Q96QK1 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS35Q96QK1 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS35Q96QK1 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS35Q96QK1 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
VPS35Q96QK1 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
VPS35Q96QK1 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS35Q96QK1 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS35Q96QK1 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS35Q96QK1 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
VPS35Q96QK1 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS35Q96QK1 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms