Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AL032819.2-201ENST00000624543 2162 ntBASIC17.91■□□□□ 0.46
PTCHD1Q96NR3 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD1Q96NR3 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD1Q96NR3 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.91■□□□□ 0.46
PTCHD1Q96NR3 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD1Q96NR3 LINC01568-207ENST00000641790 1380 ntBASIC17.91■□□□□ 0.46
PTCHD1Q96NR3 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 AC120498.9-201ENST00000339021 3867 ntBASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD1Q96NR3 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.89■□□□□ 0.46
PTCHD1Q96NR3 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
PTCHD1Q96NR3 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
PTCHD1Q96NR3 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.89■□□□□ 0.46
PTCHD1Q96NR3 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 TEX21P-204ENST00000641479 1693 ntBASIC17.89■□□□□ 0.45
PTCHD1Q96NR3 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 EGLN1P1-201ENST00000531623 762 ntBASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.88■□□□□ 0.45
PTCHD1Q96NR3 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms