Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC23.61■■□□□ 1.371e-8■■■□□ 19
UPF1Q92900 RAB3GAP1-201ENST00000264158 4914 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.754e-8■■■□□ 19
UPF1Q92900 RAB3GAP1-204ENST00000487003 3506 ntTSL 56.48□□□□□ -1.374e-8■■■□□ 19
UPF1Q92900 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.79□□□□□ -1.484e-8■■■□□ 19
UPF1Q92900 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.29■□□□□ 0.844e-7■■■□□ 19
UPF1Q92900 FBRS-206ENST00000494101 2782 ntTSL 218.19■□□□□ 0.54e-7■■■□□ 19
UPF1Q92900 FBRS-208ENST00000543786 2890 ntTSL 214.68□□□□□ -0.064e-7■■■□□ 19
UPF1Q92900 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.14e-7■■■□□ 19
UPF1Q92900 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC20.22■□□□□ 0.833e-6■■■□□ 19
UPF1Q92900 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC18.87■□□□□ 0.613e-6■■■□□ 19
UPF1Q92900 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC17.51■□□□□ 0.393e-6■■■□□ 19
UPF1Q92900 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC17.51■□□□□ 0.393e-6■■■□□ 19
UPF1Q92900 PGAP2-204ENST00000396991 1798 ntTSL 5 BASIC17.39■□□□□ 0.373e-6■■■□□ 19
UPF1Q92900 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC17.26■□□□□ 0.353e-6■■■□□ 19
UPF1Q92900 PGAP2-235ENST00000532523 1696 ntTSL 5 BASIC17.16■□□□□ 0.343e-6■■■□□ 19
UPF1Q92900 PGAP2-217ENST00000477358 1474 ntTSL 515.4■□□□□ 0.063e-6■■■□□ 19
UPF1Q92900 PGAP2-225ENST00000493547 1772 ntTSL 3 BASIC12.81□□□□□ -0.363e-6■■■□□ 19
UPF1Q92900 PGAP2-231ENST00000528216 1815 ntTSL 1 (best)12.16□□□□□ -0.463e-6■■■□□ 19
UPF1Q92900 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC26.67■■□□□ 1.864e-13■■■□□ 19
UPF1Q92900 KIAA1671-201ENST00000358431 10490 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.72e-7■■■□□ 18.9
UPF1Q92900 KIAA1671-203ENST00000406486 7864 ntAPPRIS P2 TSL 5 BASIC10.33□□□□□ -0.762e-7■■■□□ 18.9
UPF1Q92900 KIAA1671-202ENST00000401395 6386 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.772e-7■■■□□ 18.9
UPF1Q92900 KIAA1671-206ENST00000637069 6510 ntAPPRIS ALT2 TSL 5 BASIC8.68□□□□□ -1.022e-7■■■□□ 18.9
UPF1Q92900 AMPD2-202ENST00000342115 3728 ntTSL 1 (best) BASIC12.38□□□□□ -0.432e-6■■■□□ 18.9
UPF1Q92900 AMPD2-201ENST00000256578 3899 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.442e-6■■■□□ 18.9
UPF1Q92900 AMPD2-205ENST00000393688 3217 ntTSL 1 (best) BASIC12.24□□□□□ -0.452e-6■■■□□ 18.9
UPF1Q92900 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.368e-11■■■□□ 18.9
UPF1Q92900 KLF6-203ENST00000461124 764 ntTSL 521.85■■□□□ 1.092e-7■■■□□ 18.9
UPF1Q92900 KLF6-206ENST00000497571 4656 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.032e-7■■■□□ 18.9
UPF1Q92900 KLF6-207ENST00000542957 4537 ntTSL 5 BASIC11.68□□□□□ -0.542e-7■■■□□ 18.9
UPF1Q92900 GLYR1-207ENST00000587936 897 ntTSL 520.12■□□□□ 0.813e-8■■■□□ 18.9
UPF1Q92900 GLYR1-201ENST00000321919 3772 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.543e-8■■■□□ 18.9
UPF1Q92900 GLYR1-202ENST00000436648 3466 ntTSL 2 BASIC11.31□□□□□ -0.63e-8■■■□□ 18.9
UPF1Q92900 GLYR1-210ENST00000589389 3606 ntTSL 1 (best)10.83□□□□□ -0.683e-8■■■□□ 18.9
UPF1Q92900 GLYR1-209ENST00000588732 3527 ntTSL 1 (best)10.11□□□□□ -0.793e-8■■■□□ 18.9
UPF1Q92900 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC22.36■■□□□ 1.174e-8■■■□□ 18.9
UPF1Q92900 SH3GLB2-206ENST00000417224 1468 ntTSL 5 BASIC17.37■□□□□ 0.374e-8■■■□□ 18.9
UPF1Q92900 PHF13-202ENST00000495385 798 ntTSL 328.91■■■□□ 2.221e-17■■■□□ 18.9
UPF1Q92900 TAF1-201ENST00000276072 5692 ntAPPRIS P3 TSL 5 BASIC9.74□□□□□ -0.858e-8■■■□□ 18.9
UPF1Q92900 TAF1-204ENST00000423759 7722 ntAPPRIS ALT2 TSL 5 BASIC8.44□□□□□ -1.068e-8■■■□□ 18.9
UPF1Q92900 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC7.93□□□□□ -1.148e-8■■■□□ 18.9
UPF1Q92900 ATP11A-211ENST00000479193 621 ntTSL 222.07■■□□□ 1.122e-14■■■□□ 18.9
UPF1Q92900 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.463e-7■■■□□ 18.9
UPF1Q92900 UBN1-202ENST00000396658 6336 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.443e-7■■■□□ 18.9
UPF1Q92900 DNAJB1-202ENST00000396969 1287 ntTSL 2 BASIC13.91□□□□□ -0.181e-14■■■□□ 18.9
UPF1Q92900 DLST-201ENST00000238671 1464 ntTSL 212.07□□□□□ -0.482e-7■■■□□ 18.9
UPF1Q92900 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC26.98■■□□□ 1.913e-6■■■□□ 18.9
UPF1Q92900 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC24.42■■□□□ 1.53e-6■■■□□ 18.9
UPF1Q92900 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC22.81■■□□□ 1.243e-6■■■□□ 18.9
UPF1Q92900 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.71■□□□□ 0.743e-6■■■□□ 18.9
UPF1Q92900 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.053e-6■■■□□ 18.9
UPF1Q92900 PLEKHA8-204ENST00000440706 7514 ntTSL 1 (best)7.98□□□□□ -1.133e-6■■■□□ 18.9
UPF1Q92900 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.89e-7■■■□□ 18.9
UPF1Q92900 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC25.99■■□□□ 1.759e-7■■■□□ 18.9
UPF1Q92900 PRSS21-207ENST00000574813 873 ntTSL 325.89■■□□□ 1.749e-7■■■□□ 18.9
UPF1Q92900 PRSS21-206ENST00000574265 860 ntTSL 318.15■□□□□ 0.59e-7■■■□□ 18.9
UPF1Q92900 PRSS21-209ENST00000575739 378 ntTSL 313.91□□□□□ -0.189e-7■■■□□ 18.9
UPF1Q92900 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.5□□□□□ -0.094e-7■■■□□ 18.9
UPF1Q92900 C2orf82-205ENST00000449331 466 ntTSL 329.66■■■□□ 2.344e-10■■■□□ 18.9
UPF1Q92900 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC29.62■■■□□ 2.334e-10■■■□□ 18.9
UPF1Q92900 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC29.61■■■□□ 2.334e-10■■■□□ 18.9
UPF1Q92900 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC26.17■■□□□ 1.784e-10■■■□□ 18.9
UPF1Q92900 AP1B1-203ENST00000402502 2935 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.644e-6■■■□□ 18.9
UPF1Q92900 REPIN1-207ENST00000473391 1064 ntTSL 230.74■■■□□ 2.512e-7■■■□□ 18.9
UPF1Q92900 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC19.76■□□□□ 0.758e-13■■■□□ 18.9
UPF1Q92900 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.438e-13■■■□□ 18.9
UPF1Q92900 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.155e-8■■■□□ 18.9
UPF1Q92900 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.155e-8■■■□□ 18.9
UPF1Q92900 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC38.91■■■■□ 3.821e-19■■■□□ 18.9
UPF1Q92900 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC34.84■■■■□ 3.171e-19■■■□□ 18.9
UPF1Q92900 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.781e-19■■■□□ 18.9
UPF1Q92900 MPST-204ENST00000404393 1329 ntTSL 5 BASIC29.96■■■□□ 2.391e-19■■■□□ 18.9
UPF1Q92900 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC29.83■■■□□ 2.371e-19■■■□□ 18.9
UPF1Q92900 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.291e-19■■■□□ 18.9
UPF1Q92900 MPST-207ENST00000485587 5872 ntTSL 216.22■□□□□ 0.191e-19■■■□□ 18.9
UPF1Q92900 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC27.09■■□□□ 1.935e-12■■■□□ 18.8
UPF1Q92900 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC25.84■■□□□ 1.735e-12■■■□□ 18.8
UPF1Q92900 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC25.51■■□□□ 1.675e-12■■■□□ 18.8
UPF1Q92900 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.345e-12■■■□□ 18.8
UPF1Q92900 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC22.6■■□□□ 1.215e-12■■■□□ 18.8
UPF1Q92900 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.3■□□□□ 0.685e-12■■■□□ 18.8
UPF1Q92900 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC25.43■■□□□ 1.669e-7■■■□□ 18.8
UPF1Q92900 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC7.49□□□□□ -1.211e-8■■■□□ 18.8
UPF1Q92900 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.172e-7■■■□□ 18.8
UPF1Q92900 ZMAT2-201ENST00000274712 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.142e-8■■■□□ 18.8
UPF1Q92900 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC28.42■■■□□ 2.141e-18■■■□□ 18.8
UPF1Q92900 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.15□□□□□ -0.141e-9■■■□□ 18.8
UPF1Q92900 TSC22D1-203ENST00000458659 4820 ntTSL 1 (best) BASIC12.39□□□□□ -0.431e-9■■■□□ 18.8
UPF1Q92900 TSC22D1-201ENST00000261489 3135 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.691e-9■■■□□ 18.8
UPF1Q92900 TSC22D1-213ENST00000622051 2872 ntTSL 2 BASIC9.21□□□□□ -0.931e-9■■■□□ 18.8
UPF1Q92900 TSC22D1-212ENST00000611198 2877 ntTSL 2 BASIC8.33□□□□□ -1.081e-9■■■□□ 18.8
UPF1Q92900 ISG20L2-201ENST00000313146 3303 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.33e-6■■■□□ 18.8
UPF1Q92900 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.111e-11■■■□□ 18.8
UPF1Q92900 ITGA5-203ENST00000547197 757 ntTSL 322.17■■□□□ 1.147e-8■■■□□ 18.8
UPF1Q92900 ATP2B4-203ENST00000357681 8968 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.022e-6■■■□□ 18.8
UPF1Q92900 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC7.24□□□□□ -1.252e-6■■■□□ 18.8
UPF1Q92900 ATP2B4-207ENST00000484746 4697 ntTSL 1 (best)5.98□□□□□ -1.452e-6■■■□□ 18.8
UPF1Q92900 TP53-203ENST00000413465 1018 ntTSL 1 (best) BASIC15.33■□□□□ 0.048e-7■■■□□ 18.8
UPF1Q92900 TP53-202ENST00000359597 1152 ntTSL 1 (best) BASIC15.12■□□□□ 0.018e-7■■■□□ 18.8
UPF1Q92900 TP53-219ENST00000610538 2580 ntTSL 1 (best) BASIC14.37□□□□□ -0.118e-7■■■□□ 18.8
Retrieved 100 of 15,879 protein–RNA pairs in 167.2 ms