Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
SHROOM3Q8TF72 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 FEM1AP3-201ENST00000403722 1741 ntBASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 AC092865.7-201ENST00000641832 219 ntBASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.38■□□□□ 0.69
SHROOM3Q8TF72 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 AL355355.2-201ENST00000442321 338 ntBASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 RBM17P1-201ENST00000453646 1190 ntBASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SHROOM3Q8TF72 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 SLC25A1P4-201ENST00000567977 778 ntBASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHROOM3Q8TF72 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.35■□□□□ 0.69
SHROOM3Q8TF72 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.35■□□□□ 0.69
SHROOM3Q8TF72 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.35■□□□□ 0.69
SHROOM3Q8TF72 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM3Q8TF72 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.35■□□□□ 0.69
SHROOM3Q8TF72 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM3Q8TF72 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.35■□□□□ 0.69
SHROOM3Q8TF72 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM3Q8TF72 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SHROOM3Q8TF72 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.35■□□□□ 0.69
SHROOM3Q8TF72 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM3Q8TF72 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM3Q8TF72 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM3Q8TF72 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM3Q8TF72 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM3Q8TF72 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.35■□□□□ 0.69
SHROOM3Q8TF72 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms