Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
ZNF549Q6P9A3 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF549Q6P9A3 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF549Q6P9A3 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF549Q6P9A3 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF549Q6P9A3 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF549Q6P9A3 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.86■□□□□ 0.61
ZNF549Q6P9A3 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF549Q6P9A3 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF549Q6P9A3 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.86■□□□□ 0.61
ZNF549Q6P9A3 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.86■□□□□ 0.61
ZNF549Q6P9A3 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 AC093525.10-201ENST00000625130 1569 ntBASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 KRT8P11-201ENST00000409686 1436 ntBASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 RARRES2P10-201ENST00000564312 460 ntBASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF549Q6P9A3 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 AL512353.2-201ENST00000448759 1962 ntBASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 AC008040.2-201ENST00000461049 708 ntBASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 AC091390.4-202ENST00000476426 537 ntBASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 FAM197Y4-202ENST00000622692 608 ntBASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 RCC2P6-201ENST00000526625 1557 ntBASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF549Q6P9A3 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
ZNF549Q6P9A3 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
ZNF549Q6P9A3 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.83■□□□□ 0.61
ZNF549Q6P9A3 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.61
ZNF549Q6P9A3 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.61
ZNF549Q6P9A3 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
ZNF549Q6P9A3 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
ZNF549Q6P9A3 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.83■□□□□ 0.61
ZNF549Q6P9A3 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
ZNF549Q6P9A3 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
ZNF549Q6P9A3 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
ZNF549Q6P9A3 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.83■□□□□ 0.6
ZNF549Q6P9A3 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.83■□□□□ 0.6
ZNF549Q6P9A3 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.83■□□□□ 0.6
ZNF549Q6P9A3 CR392000.1-201ENST00000624770 1228 ntBASIC18.83■□□□□ 0.6
ZNF549Q6P9A3 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ZNF549Q6P9A3 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
ZNF549Q6P9A3 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
ZNF549Q6P9A3 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.83■□□□□ 0.6
ZNF549Q6P9A3 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
ZNF549Q6P9A3 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.83■□□□□ 0.6
ZNF549Q6P9A3 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
ZNF549Q6P9A3 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.83■□□□□ 0.6
ZNF549Q6P9A3 KRT16P1-201ENST00000399124 1418 ntBASIC18.83■□□□□ 0.6
ZNF549Q6P9A3 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
ZNF549Q6P9A3 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms