Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
USF3Q68DE3 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
USF3Q68DE3 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
USF3Q68DE3 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC16.31■□□□□ 0.2
USF3Q68DE3 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF3Q68DE3 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF3Q68DE3 AC116562.4-201ENST00000641316 2276 ntBASIC16.31■□□□□ 0.2
USF3Q68DE3 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF3Q68DE3 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF3Q68DE3 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC16.31■□□□□ 0.2
USF3Q68DE3 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USF3Q68DE3 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC16.31■□□□□ 0.2
USF3Q68DE3 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC16.31■□□□□ 0.2
USF3Q68DE3 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USF3Q68DE3 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USF3Q68DE3 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USF3Q68DE3 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC16.31■□□□□ 0.2
USF3Q68DE3 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF3Q68DE3 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF3Q68DE3 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF3Q68DE3 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.31■□□□□ 0.2
USF3Q68DE3 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC16.31■□□□□ 0.2
USF3Q68DE3 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF3Q68DE3 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USF3Q68DE3 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF3Q68DE3 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USF3Q68DE3 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF3Q68DE3 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.31■□□□□ 0.2
USF3Q68DE3 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USF3Q68DE3 AC009947.2-201ENST00000444014 672 ntBASIC16.31■□□□□ 0.2
USF3Q68DE3 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC16.31■□□□□ 0.2
USF3Q68DE3 CD81-212ENST00000526072 1172 ntTSL 5 BASIC16.31■□□□□ 0.2
USF3Q68DE3 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.31■□□□□ 0.2
USF3Q68DE3 AL160286.2-201ENST00000567150 934 ntBASIC16.31■□□□□ 0.2
USF3Q68DE3 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USF3Q68DE3 POLI-202ENST00000406285 2030 ntTSL 2 BASIC16.31■□□□□ 0.2
USF3Q68DE3 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF3Q68DE3 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
USF3Q68DE3 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.31■□□□□ 0.2
USF3Q68DE3 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC16.31■□□□□ 0.2
USF3Q68DE3 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC16.31■□□□□ 0.2
USF3Q68DE3 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
USF3Q68DE3 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC16.31■□□□□ 0.2
USF3Q68DE3 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USF3Q68DE3 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USF3Q68DE3 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USF3Q68DE3 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
USF3Q68DE3 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
USF3Q68DE3 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
USF3Q68DE3 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.3■□□□□ 0.2
USF3Q68DE3 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.3■□□□□ 0.2
USF3Q68DE3 AC008622.2-201ENST00000617006 1229 ntBASIC16.3■□□□□ 0.2
USF3Q68DE3 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
USF3Q68DE3 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
USF3Q68DE3 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
USF3Q68DE3 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
USF3Q68DE3 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USF3Q68DE3 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
USF3Q68DE3 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
USF3Q68DE3 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
USF3Q68DE3 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.3■□□□□ 0.2
USF3Q68DE3 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USF3Q68DE3 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
USF3Q68DE3 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.3■□□□□ 0.2
USF3Q68DE3 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.3■□□□□ 0.2
USF3Q68DE3 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.3■□□□□ 0.2
USF3Q68DE3 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.3■□□□□ 0.2
USF3Q68DE3 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
USF3Q68DE3 AC140113.3-201ENST00000605663 199 ntBASIC16.3■□□□□ 0.2
USF3Q68DE3 AC083849.1-201ENST00000615227 514 ntBASIC16.3■□□□□ 0.2
USF3Q68DE3 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.3■□□□□ 0.2
USF3Q68DE3 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
USF3Q68DE3 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USF3Q68DE3 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USF3Q68DE3 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
USF3Q68DE3 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
USF3Q68DE3 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC16.3■□□□□ 0.2
USF3Q68DE3 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
USF3Q68DE3 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
USF3Q68DE3 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USF3Q68DE3 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC16.29■□□□□ 0.2
USF3Q68DE3 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USF3Q68DE3 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USF3Q68DE3 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USF3Q68DE3 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC16.29■□□□□ 0.2
USF3Q68DE3 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
USF3Q68DE3 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC16.29■□□□□ 0.2
USF3Q68DE3 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USF3Q68DE3 PCED1CP-201ENST00000419887 785 ntBASIC16.29■□□□□ 0.2
USF3Q68DE3 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USF3Q68DE3 FAM86EP-206ENST00000510506 987 ntBASIC16.29■□□□□ 0.2
USF3Q68DE3 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.29■□□□□ 0.2
USF3Q68DE3 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USF3Q68DE3 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USF3Q68DE3 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC16.29■□□□□ 0.2
USF3Q68DE3 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC16.29■□□□□ 0.2
USF3Q68DE3 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
USF3Q68DE3 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
USF3Q68DE3 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USF3Q68DE3 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms