Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PCDH1Q08174 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
PCDH1Q08174 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.33■□□□□ 0.52
PCDH1Q08174 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PCDH1Q08174 AC098590.1-201ENST00000468126 897 ntBASIC18.33■□□□□ 0.52
PCDH1Q08174 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.33■□□□□ 0.52
PCDH1Q08174 TMEM191A-211ENST00000637163 1067 ntBASIC18.33■□□□□ 0.52
PCDH1Q08174 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
PCDH1Q08174 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.52
PCDH1Q08174 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PCDH1Q08174 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PCDH1Q08174 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PCDH1Q08174 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
PCDH1Q08174 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PCDH1Q08174 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PCDH1Q08174 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH1Q08174 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.32■□□□□ 0.52
PCDH1Q08174 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH1Q08174 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.32■□□□□ 0.52
PCDH1Q08174 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH1Q08174 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH1Q08174 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH1Q08174 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH1Q08174 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH1Q08174 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH1Q08174 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH1Q08174 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.32■□□□□ 0.52
PCDH1Q08174 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.32■□□□□ 0.52
PCDH1Q08174 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.32■□□□□ 0.52
PCDH1Q08174 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
PCDH1Q08174 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH1Q08174 UBE2SP1-201ENST00000450587 669 ntBASIC18.32■□□□□ 0.52
PCDH1Q08174 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH1Q08174 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.32■□□□□ 0.52
PCDH1Q08174 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.32■□□□□ 0.52
PCDH1Q08174 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.32■□□□□ 0.52
PCDH1Q08174 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.32■□□□□ 0.52
PCDH1Q08174 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH1Q08174 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH1Q08174 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH1Q08174 Z98044.1-201ENST00000632503 1764 ntBASIC18.32■□□□□ 0.52
PCDH1Q08174 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH1Q08174 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH1Q08174 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH1Q08174 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH1Q08174 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH1Q08174 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
PCDH1Q08174 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.31■□□□□ 0.52
PCDH1Q08174 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH1Q08174 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
PCDH1Q08174 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH1Q08174 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH1Q08174 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
PCDH1Q08174 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
PCDH1Q08174 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.31■□□□□ 0.52
PCDH1Q08174 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
PCDH1Q08174 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH1Q08174 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
PCDH1Q08174 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
PCDH1Q08174 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH1Q08174 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH1Q08174 AC142381.4-202ENST00000563973 229 ntBASIC18.31■□□□□ 0.52
PCDH1Q08174 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.31■□□□□ 0.52
PCDH1Q08174 FAM197Y4-202ENST00000622692 608 ntBASIC18.31■□□□□ 0.52
PCDH1Q08174 CR392000.1-201ENST00000624770 1228 ntBASIC18.31■□□□□ 0.52
PCDH1Q08174 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.31■□□□□ 0.52
PCDH1Q08174 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH1Q08174 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
PCDH1Q08174 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.31■□□□□ 0.52
PCDH1Q08174 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH1Q08174 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.31■□□□□ 0.52
PCDH1Q08174 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH1Q08174 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH1Q08174 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH1Q08174 KRT8P3-201ENST00000519669 1449 ntBASIC18.31■□□□□ 0.52
PCDH1Q08174 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH1Q08174 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH1Q08174 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.31■□□□□ 0.52
PCDH1Q08174 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH1Q08174 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.3■□□□□ 0.52
PCDH1Q08174 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
PCDH1Q08174 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
PCDH1Q08174 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
PCDH1Q08174 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH1Q08174 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.3■□□□□ 0.52
PCDH1Q08174 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.3■□□□□ 0.52
PCDH1Q08174 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.3■□□□□ 0.52
PCDH1Q08174 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.3■□□□□ 0.52
PCDH1Q08174 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.3■□□□□ 0.52
PCDH1Q08174 MESTP1-201ENST00000404287 994 ntBASIC18.3■□□□□ 0.52
PCDH1Q08174 AC008040.2-201ENST00000461049 708 ntBASIC18.3■□□□□ 0.52
PCDH1Q08174 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.3■□□□□ 0.52
PCDH1Q08174 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.3■□□□□ 0.52
PCDH1Q08174 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH1Q08174 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.3■□□□□ 0.52
PCDH1Q08174 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.3■□□□□ 0.52
PCDH1Q08174 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.3■□□□□ 0.52
PCDH1Q08174 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH1Q08174 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH1Q08174 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms