Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDX1P47902 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDX1P47902 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDX1P47902 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDX1P47902 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC15.48■□□□□ 0.07
CDX1P47902 AC141586.5-201ENST00000624546 2050 ntBASIC15.48■□□□□ 0.07
CDX1P47902 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
CDX1P47902 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC15.48■□□□□ 0.07
CDX1P47902 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDX1P47902 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CDX1P47902 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC15.48■□□□□ 0.07
CDX1P47902 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDX1P47902 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CDX1P47902 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDX1P47902 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDX1P47902 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CDX1P47902 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDX1P47902 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
CDX1P47902 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDX1P47902 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CDX1P47902 PEX7-202ENST00000367756 680 ntTSL 3 BASIC15.48■□□□□ 0.07
CDX1P47902 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC15.48■□□□□ 0.07
CDX1P47902 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDX1P47902 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC15.48■□□□□ 0.07
CDX1P47902 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC15.48■□□□□ 0.07
CDX1P47902 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC15.48■□□□□ 0.07
CDX1P47902 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
CDX1P47902 AC093827.2-201ENST00000512654 315 ntBASIC15.48■□□□□ 0.07
CDX1P47902 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC15.48■□□□□ 0.07
CDX1P47902 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC15.48■□□□□ 0.07
CDX1P47902 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC15.48■□□□□ 0.07
CDX1P47902 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CDX1P47902 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
CDX1P47902 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDX1P47902 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC15.48■□□□□ 0.07
CDX1P47902 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDX1P47902 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CDX1P47902 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDX1P47902 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDX1P47902 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDX1P47902 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC15.47■□□□□ 0.07
CDX1P47902 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
CDX1P47902 AC068880.1-201ENST00000507289 2297 ntBASIC15.47■□□□□ 0.07
CDX1P47902 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDX1P47902 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDX1P47902 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDX1P47902 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
CDX1P47902 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDX1P47902 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC15.47■□□□□ 0.07
CDX1P47902 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDX1P47902 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDX1P47902 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDX1P47902 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDX1P47902 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDX1P47902 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDX1P47902 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDX1P47902 AC239809.2-201ENST00000415381 517 ntBASIC15.47■□□□□ 0.07
CDX1P47902 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC15.47■□□□□ 0.07
CDX1P47902 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDX1P47902 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC15.47■□□□□ 0.07
CDX1P47902 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC15.47■□□□□ 0.07
CDX1P47902 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDX1P47902 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
CDX1P47902 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC15.47■□□□□ 0.07
CDX1P47902 LY6E-205ENST00000519611 635 ntTSL 3 BASIC15.47■□□□□ 0.07
CDX1P47902 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
CDX1P47902 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
CDX1P47902 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC15.47■□□□□ 0.07
CDX1P47902 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC15.47■□□□□ 0.07
CDX1P47902 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
CDX1P47902 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC15.47■□□□□ 0.07
CDX1P47902 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDX1P47902 AL121906.2-201ENST00000621597 723 ntBASIC15.47■□□□□ 0.07
CDX1P47902 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
CDX1P47902 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC15.47■□□□□ 0.07
CDX1P47902 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC15.47■□□□□ 0.07
CDX1P47902 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDX1P47902 DPP3P2-201ENST00000416030 1696 ntBASIC15.47■□□□□ 0.07
CDX1P47902 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDX1P47902 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDX1P47902 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC15.47■□□□□ 0.07
CDX1P47902 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDX1P47902 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
CDX1P47902 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDX1P47902 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDX1P47902 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC15.47■□□□□ 0.07
CDX1P47902 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC15.47■□□□□ 0.07
CDX1P47902 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDX1P47902 H19-201ENST00000411754 1788 ntTSL 5 BASIC15.47■□□□□ 0.07
CDX1P47902 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC15.46■□□□□ 0.07
CDX1P47902 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDX1P47902 MME-217ENST00000616757 1315 ntTSL 5 BASIC15.46■□□□□ 0.07
CDX1P47902 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
CDX1P47902 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC15.46■□□□□ 0.07
CDX1P47902 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDX1P47902 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDX1P47902 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CDX1P47902 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDX1P47902 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDX1P47902 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms