Protein–RNA interactions for Protein: P46736

BRCC3, Lys-63-specific deubiquitinase BRCC36, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3P46736 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
BRCC3P46736 AL023284.2-201ENST00000405850 579 ntBASIC20.24■□□□□ 0.83
BRCC3P46736 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.24■□□□□ 0.83
BRCC3P46736 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.24■□□□□ 0.83
BRCC3P46736 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.24■□□□□ 0.83
BRCC3P46736 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.24■□□□□ 0.83
BRCC3P46736 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.24■□□□□ 0.83
BRCC3P46736 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
BRCC3P46736 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BRCC3P46736 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
BRCC3P46736 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
BRCC3P46736 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
BRCC3P46736 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BRCC3P46736 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BRCC3P46736 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
BRCC3P46736 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BRCC3P46736 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BRCC3P46736 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
BRCC3P46736 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.23■□□□□ 0.83
BRCC3P46736 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
BRCC3P46736 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BRCC3P46736 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BRCC3P46736 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
BRCC3P46736 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.23■□□□□ 0.83
BRCC3P46736 HOMER2P1-201ENST00000455653 964 ntBASIC20.23■□□□□ 0.83
BRCC3P46736 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.23■□□□□ 0.83
BRCC3P46736 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.23■□□□□ 0.83
BRCC3P46736 GCSHP2-201ENST00000560971 527 ntBASIC20.23■□□□□ 0.83
BRCC3P46736 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.23■□□□□ 0.83
BRCC3P46736 AL358472.4-201ENST00000633140 710 ntBASIC20.23■□□□□ 0.83
BRCC3P46736 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
BRCC3P46736 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
BRCC3P46736 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BRCC3P46736 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.23■□□□□ 0.83
BRCC3P46736 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BRCC3P46736 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BRCC3P46736 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
BRCC3P46736 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC20.22■□□□□ 0.83
BRCC3P46736 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
BRCC3P46736 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
BRCC3P46736 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
BRCC3P46736 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BRCC3P46736 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.22■□□□□ 0.83
BRCC3P46736 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.22■□□□□ 0.83
BRCC3P46736 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BRCC3P46736 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
BRCC3P46736 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BRCC3P46736 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
BRCC3P46736 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BRCC3P46736 AC036111.1-201ENST00000533973 1582 ntBASIC20.21■□□□□ 0.83
BRCC3P46736 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
BRCC3P46736 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.21■□□□□ 0.83
BRCC3P46736 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.21■□□□□ 0.83
BRCC3P46736 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
BRCC3P46736 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BRCC3P46736 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.21■□□□□ 0.83
BRCC3P46736 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.21■□□□□ 0.83
BRCC3P46736 NEK4P2-201ENST00000580004 1012 ntBASIC20.21■□□□□ 0.83
BRCC3P46736 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC20.21■□□□□ 0.83
BRCC3P46736 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BRCC3P46736 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
BRCC3P46736 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BRCC3P46736 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
BRCC3P46736 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.21■□□□□ 0.83
BRCC3P46736 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
BRCC3P46736 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.21■□□□□ 0.83
BRCC3P46736 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
BRCC3P46736 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
BRCC3P46736 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
BRCC3P46736 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
BRCC3P46736 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
BRCC3P46736 KRT8P3-201ENST00000519669 1449 ntBASIC20.2■□□□□ 0.82
BRCC3P46736 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
BRCC3P46736 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
BRCC3P46736 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
BRCC3P46736 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
BRCC3P46736 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
BRCC3P46736 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC20.2■□□□□ 0.82
BRCC3P46736 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.2■□□□□ 0.82
BRCC3P46736 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.2■□□□□ 0.82
BRCC3P46736 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
BRCC3P46736 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
BRCC3P46736 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.2■□□□□ 0.82
BRCC3P46736 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.2■□□□□ 0.82
BRCC3P46736 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.2■□□□□ 0.82
BRCC3P46736 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.2■□□□□ 0.82
BRCC3P46736 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC20.2■□□□□ 0.82
BRCC3P46736 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
BRCC3P46736 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
BRCC3P46736 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.2■□□□□ 0.82
BRCC3P46736 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRCC3P46736 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRCC3P46736 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRCC3P46736 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRCC3P46736 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.19■□□□□ 0.82
BRCC3P46736 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.19■□□□□ 0.82
BRCC3P46736 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRCC3P46736 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.19■□□□□ 0.82
BRCC3P46736 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRCC3P46736 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms