Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
PTPN9P43378 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.75
PTPN9P43378 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN9P43378 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN9P43378 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN9P43378 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
PTPN9P43378 CROCCP3-202ENST00000420820 1947 ntBASIC19.76■□□□□ 0.75
PTPN9P43378 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN9P43378 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
PTPN9P43378 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN9P43378 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.76■□□□□ 0.75
PTPN9P43378 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.76■□□□□ 0.75
PTPN9P43378 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN9P43378 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.76■□□□□ 0.75
PTPN9P43378 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN9P43378 UNC93B2-201ENST00000285383 730 ntBASIC19.76■□□□□ 0.75
PTPN9P43378 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN9P43378 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN9P43378 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN9P43378 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN9P43378 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.76■□□□□ 0.75
PTPN9P43378 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.76■□□□□ 0.75
PTPN9P43378 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.76■□□□□ 0.75
PTPN9P43378 AC066615.1-201ENST00000640911 628 ntBASIC19.76■□□□□ 0.75
PTPN9P43378 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN9P43378 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN9P43378 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN9P43378 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN9P43378 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN9P43378 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN9P43378 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN9P43378 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN9P43378 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN9P43378 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN9P43378 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
PTPN9P43378 AC093525.10-201ENST00000625130 1569 ntBASIC19.75■□□□□ 0.75
PTPN9P43378 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN9P43378 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN9P43378 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN9P43378 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN9P43378 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN9P43378 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.75■□□□□ 0.75
PTPN9P43378 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.75■□□□□ 0.75
PTPN9P43378 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.75■□□□□ 0.75
PTPN9P43378 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.75■□□□□ 0.75
PTPN9P43378 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.75■□□□□ 0.75
PTPN9P43378 AC093827.2-201ENST00000512654 315 ntBASIC19.75■□□□□ 0.75
PTPN9P43378 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
PTPN9P43378 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN9P43378 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.75■□□□□ 0.75
PTPN9P43378 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.75■□□□□ 0.75
PTPN9P43378 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN9P43378 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN9P43378 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN9P43378 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN9P43378 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
PTPN9P43378 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN9P43378 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.75■□□□□ 0.75
PTPN9P43378 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTPN9P43378 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
PTPN9P43378 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.74■□□□□ 0.75
PTPN9P43378 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTPN9P43378 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTPN9P43378 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.74■□□□□ 0.75
PTPN9P43378 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTPN9P43378 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.74■□□□□ 0.75
PTPN9P43378 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
PTPN9P43378 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTPN9P43378 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.74■□□□□ 0.75
PTPN9P43378 CRYGFP-201ENST00000418459 633 ntBASIC19.74■□□□□ 0.75
PTPN9P43378 AL355075.4-201ENST00000554988 638 ntBASIC19.74■□□□□ 0.75
PTPN9P43378 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTPN9P43378 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PTPN9P43378 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.74■□□□□ 0.75
PTPN9P43378 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
PTPN9P43378 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTPN9P43378 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PTPN9P43378 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.74■□□□□ 0.75
PTPN9P43378 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
PTPN9P43378 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
PTPN9P43378 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTPN9P43378 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
PTPN9P43378 AC079598.2-202ENST00000546624 1451 ntBASIC19.73■□□□□ 0.75
PTPN9P43378 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.73■□□□□ 0.75
PTPN9P43378 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN9P43378 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN9P43378 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN9P43378 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN9P43378 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN9P43378 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.73■□□□□ 0.75
PTPN9P43378 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN9P43378 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN9P43378 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN9P43378 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN9P43378 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
PTPN9P43378 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN9P43378 CA15P1-201ENST00000481698 905 ntBASIC19.73■□□□□ 0.75
PTPN9P43378 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.73■□□□□ 0.75
PTPN9P43378 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.73■□□□□ 0.75
PTPN9P43378 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms