Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC008764.6-201ENST00000595909 2069 ntBASIC19.09■□□□□ 0.65
VIMP08670 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VIMP08670 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VIMP08670 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VIMP08670 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.09■□□□□ 0.65
VIMP08670 AL591742.1-201ENST00000604433 565 ntBASIC19.09■□□□□ 0.65
VIMP08670 AL139246.5-201ENST00000606645 996 ntBASIC19.09■□□□□ 0.65
VIMP08670 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.09■□□□□ 0.65
VIMP08670 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
VIMP08670 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VIMP08670 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VIMP08670 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
VIMP08670 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VIMP08670 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VIMP08670 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VIMP08670 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VIMP08670 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VIMP08670 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
VIMP08670 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
VIMP08670 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
VIMP08670 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VIMP08670 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VIMP08670 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
VIMP08670 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
VIMP08670 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
VIMP08670 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC19.08■□□□□ 0.65
VIMP08670 PRORSD1P-202ENST00000563365 2154 ntBASIC19.08■□□□□ 0.65
VIMP08670 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.65
VIMP08670 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
VIMP08670 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VIMP08670 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VIMP08670 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VIMP08670 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.08■□□□□ 0.64
VIMP08670 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.08■□□□□ 0.64
VIMP08670 AC110285.6-201ENST00000617652 491 ntBASIC19.08■□□□□ 0.64
VIMP08670 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.08■□□□□ 0.64
VIMP08670 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VIMP08670 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VIMP08670 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
VIMP08670 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
VIMP08670 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
VIMP08670 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VIMP08670 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.64
VIMP08670 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
VIMP08670 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC19.08■□□□□ 0.64
VIMP08670 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.08■□□□□ 0.64
VIMP08670 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC19.07■□□□□ 0.64
VIMP08670 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
VIMP08670 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VIMP08670 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.07■□□□□ 0.64
VIMP08670 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
VIMP08670 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.07■□□□□ 0.64
VIMP08670 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VIMP08670 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.07■□□□□ 0.64
VIMP08670 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
VIMP08670 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.07■□□□□ 0.64
VIMP08670 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
VIMP08670 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
VIMP08670 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
VIMP08670 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VIMP08670 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VIMP08670 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VIMP08670 MFSD11-216ENST00000590393 1141 ntBASIC19.07■□□□□ 0.64
VIMP08670 AL136967.2-201ENST00000623968 743 ntBASIC19.07■□□□□ 0.64
VIMP08670 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
VIMP08670 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VIMP08670 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
VIMP08670 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
VIMP08670 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.07■□□□□ 0.64
VIMP08670 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.07■□□□□ 0.64
VIMP08670 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
VIMP08670 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
VIMP08670 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VIMP08670 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
VIMP08670 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VIMP08670 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VIMP08670 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
VIMP08670 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
VIMP08670 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VIMP08670 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC19.06■□□□□ 0.64
VIMP08670 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VIMP08670 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VIMP08670 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VIMP08670 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.06■□□□□ 0.64
VIMP08670 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VIMP08670 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.06■□□□□ 0.64
VIMP08670 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.06■□□□□ 0.64
VIMP08670 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.06■□□□□ 0.64
VIMP08670 AC142381.2-201ENST00000566120 298 ntBASIC19.06■□□□□ 0.64
VIMP08670 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.06■□□□□ 0.64
VIMP08670 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
VIMP08670 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC19.06■□□□□ 0.64
VIMP08670 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
VIMP08670 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.06■□□□□ 0.64
VIMP08670 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC19.06■□□□□ 0.64
VIMP08670 ESPNP-201ENST00000270691 2015 ntBASIC19.06■□□□□ 0.64
VIMP08670 SDHAP1-207ENST00000440850 2000 ntBASIC19.06■□□□□ 0.64
VIMP08670 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
VIMP08670 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VIMP08670 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms