Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 DDT-203ENST00000403754 569 ntTSL 3 BASIC11.86□□□□□ -0.51
APOBP04114 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC11.86□□□□□ -0.51
APOBP04114 ANKRD18DP-204ENST00000455355 1975 ntBASIC11.86□□□□□ -0.51
APOBP04114 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 STK25-234ENST00000535007 2459 ntTSL 2 BASIC11.86□□□□□ -0.51
APOBP04114 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC11.86□□□□□ -0.51
APOBP04114 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
APOBP04114 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
APOBP04114 GOLGA6L5P-202ENST00000515341 1828 ntBASIC11.86□□□□□ -0.51
APOBP04114 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC11.86□□□□□ -0.51
APOBP04114 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC11.86□□□□□ -0.51
APOBP04114 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC11.86□□□□□ -0.51
APOBP04114 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC11.86□□□□□ -0.51
APOBP04114 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC11.86□□□□□ -0.51
APOBP04114 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC11.86□□□□□ -0.51
APOBP04114 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC11.86□□□□□ -0.51
APOBP04114 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC11.86□□□□□ -0.51
APOBP04114 AC064862.7-201ENST00000604520 867 ntBASIC11.86□□□□□ -0.51
APOBP04114 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC11.86□□□□□ -0.51
APOBP04114 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC11.86□□□□□ -0.51
APOBP04114 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 AL691432.2-201ENST00000607222 2038 ntBASIC11.86□□□□□ -0.51
APOBP04114 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC11.86□□□□□ -0.51
APOBP04114 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC11.86□□□□□ -0.51
APOBP04114 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
APOBP04114 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC11.86□□□□□ -0.51
APOBP04114 RNPS1P1-201ENST00000507437 918 ntBASIC11.86□□□□□ -0.51
APOBP04114 AL773604.1-201ENST00000617417 272 ntBASIC11.86□□□□□ -0.51
APOBP04114 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC11.86□□□□□ -0.51
APOBP04114 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
APOBP04114 SDHAP1-207ENST00000440850 2000 ntBASIC11.85□□□□□ -0.51
APOBP04114 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
APOBP04114 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
APOBP04114 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
APOBP04114 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
APOBP04114 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
APOBP04114 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
APOBP04114 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
APOBP04114 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC11.85□□□□□ -0.51
APOBP04114 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
APOBP04114 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC11.85□□□□□ -0.51
APOBP04114 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
APOBP04114 MED22-202ENST00000371999 987 ntTSL 3 BASIC11.85□□□□□ -0.51
APOBP04114 GPX1P2-201ENST00000429271 606 ntBASIC11.85□□□□□ -0.51
APOBP04114 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
APOBP04114 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC11.85□□□□□ -0.51
APOBP04114 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC11.85□□□□□ -0.51
APOBP04114 AC092720.2-201ENST00000602388 1665 ntBASIC11.85□□□□□ -0.51
APOBP04114 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
APOBP04114 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC11.85□□□□□ -0.51
APOBP04114 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
APOBP04114 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
APOBP04114 DET1-207ENST00000564406 2315 ntTSL 2 BASIC11.85□□□□□ -0.51
APOBP04114 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
APOBP04114 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
APOBP04114 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC11.84□□□□□ -0.51
APOBP04114 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC11.84□□□□□ -0.51
APOBP04114 KRT18P58-201ENST00000527480 1120 ntBASIC11.84□□□□□ -0.51
APOBP04114 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
APOBP04114 MIR3180-5-201ENST00000583743 153 ntBASIC11.84□□□□□ -0.51
APOBP04114 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC11.84□□□□□ -0.51
APOBP04114 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
APOBP04114 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
APOBP04114 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC11.84□□□□□ -0.51
APOBP04114 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC11.84□□□□□ -0.51
APOBP04114 PRKN-208ENST00000610470 531 ntTSL 2 BASIC11.84□□□□□ -0.51
APOBP04114 PRKN-209ENST00000612485 225 ntTSL 5 BASIC11.84□□□□□ -0.51
APOBP04114 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
APOBP04114 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
APOBP04114 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
APOBP04114 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
APOBP04114 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC11.84□□□□□ -0.51
APOBP04114 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
APOBP04114 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
APOBP04114 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC11.84□□□□□ -0.51
APOBP04114 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC11.84□□□□□ -0.51
APOBP04114 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC11.84□□□□□ -0.51
APOBP04114 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC11.84□□□□□ -0.51
APOBP04114 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC11.84□□□□□ -0.51
APOBP04114 AC018712.1-201ENST00000455767 687 ntBASIC11.84□□□□□ -0.51
APOBP04114 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC11.84□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms