Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
COL3A1P02461 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.62
COL3A1P02461 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
COL3A1P02461 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
COL3A1P02461 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
COL3A1P02461 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
COL3A1P02461 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC25.14■■□□□ 1.61
COL3A1P02461 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC25.14■■□□□ 1.61
COL3A1P02461 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC25.14■■□□□ 1.61
COL3A1P02461 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC25.14■■□□□ 1.61
COL3A1P02461 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC25.13■■□□□ 1.61
COL3A1P02461 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL3A1P02461 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC25.13■■□□□ 1.61
COL3A1P02461 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL3A1P02461 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL3A1P02461 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL3A1P02461 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL3A1P02461 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
COL3A1P02461 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC25.13■■□□□ 1.61
COL3A1P02461 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
COL3A1P02461 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
COL3A1P02461 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL3A1P02461 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL3A1P02461 AP000523.1-201ENST00000398242 1049 ntBASIC25.13■■□□□ 1.61
COL3A1P02461 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC25.13■■□□□ 1.61
COL3A1P02461 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL3A1P02461 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC25.13■■□□□ 1.61
COL3A1P02461 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC25.13■■□□□ 1.61
COL3A1P02461 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC25.13■■□□□ 1.61
COL3A1P02461 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC25.13■■□□□ 1.61
COL3A1P02461 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC25.13■■□□□ 1.61
COL3A1P02461 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC25.13■■□□□ 1.61
COL3A1P02461 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC25.13■■□□□ 1.61
COL3A1P02461 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
COL3A1P02461 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
COL3A1P02461 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC25.12■■□□□ 1.61
COL3A1P02461 AC008556.1-201ENST00000610908 2040 ntBASIC25.12■■□□□ 1.61
COL3A1P02461 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC25.12■■□□□ 1.61
COL3A1P02461 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
COL3A1P02461 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
COL3A1P02461 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
COL3A1P02461 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
COL3A1P02461 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC25.12■■□□□ 1.61
COL3A1P02461 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
COL3A1P02461 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
COL3A1P02461 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC25.12■■□□□ 1.61
COL3A1P02461 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
COL3A1P02461 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC25.12■■□□□ 1.61
COL3A1P02461 NTF6B-201ENST00000591913 560 ntBASIC25.12■■□□□ 1.61
COL3A1P02461 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC25.12■■□□□ 1.61
COL3A1P02461 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC25.12■■□□□ 1.61
COL3A1P02461 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
COL3A1P02461 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC25.12■■□□□ 1.61
COL3A1P02461 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC25.12■■□□□ 1.61
COL3A1P02461 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
COL3A1P02461 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
COL3A1P02461 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC25.12■■□□□ 1.61
COL3A1P02461 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
COL3A1P02461 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC25.11■■□□□ 1.61
COL3A1P02461 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC25.11■■□□□ 1.61
COL3A1P02461 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
COL3A1P02461 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC25.11■■□□□ 1.61
COL3A1P02461 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
COL3A1P02461 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
COL3A1P02461 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC25.11■■□□□ 1.61
COL3A1P02461 AL359075.1-203ENST00000462729 1002 ntBASIC25.11■■□□□ 1.61
COL3A1P02461 SEC1P-202ENST00000473944 940 ntBASIC25.11■■□□□ 1.61
COL3A1P02461 GCSHP2-201ENST00000560971 527 ntBASIC25.11■■□□□ 1.61
COL3A1P02461 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
COL3A1P02461 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC25.11■■□□□ 1.61
COL3A1P02461 HEIH-201ENST00000623091 1652 ntBASIC25.11■■□□□ 1.61
COL3A1P02461 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
COL3A1P02461 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
COL3A1P02461 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
COL3A1P02461 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC25.1■■□□□ 1.61
COL3A1P02461 RNF152P1-201ENST00000397754 604 ntBASIC25.1■■□□□ 1.61
COL3A1P02461 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC25.1■■□□□ 1.61
COL3A1P02461 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC25.1■■□□□ 1.61
COL3A1P02461 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
COL3A1P02461 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC25.1■■□□□ 1.61
COL3A1P02461 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
COL3A1P02461 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
COL3A1P02461 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
COL3A1P02461 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
COL3A1P02461 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
COL3A1P02461 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
COL3A1P02461 ELP6-205ENST00000439305 880 ntTSL 2 BASIC25.09■■□□□ 1.61
COL3A1P02461 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC25.09■■□□□ 1.61
COL3A1P02461 SPDYE13P-201ENST00000445314 798 ntBASIC25.09■■□□□ 1.61
COL3A1P02461 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC25.09■■□□□ 1.61
COL3A1P02461 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
COL3A1P02461 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
COL3A1P02461 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC25.09■■□□□ 1.61
COL3A1P02461 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
COL3A1P02461 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
COL3A1P02461 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC25.09■■□□□ 1.61
COL3A1P02461 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
COL3A1P02461 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
COL3A1P02461 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
COL3A1P02461 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms