Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.59■□□□□ 0.57
SIX3O95343 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.59■□□□□ 0.57
SIX3O95343 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SIX3O95343 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
SIX3O95343 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
SIX3O95343 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.59■□□□□ 0.57
SIX3O95343 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.59■□□□□ 0.57
SIX3O95343 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.59■□□□□ 0.57
SIX3O95343 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.59■□□□□ 0.57
SIX3O95343 AC005082.1-201ENST00000413042 2259 ntBASIC18.59■□□□□ 0.57
SIX3O95343 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SIX3O95343 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SIX3O95343 KRT8P41-201ENST00000533985 1514 ntBASIC18.59■□□□□ 0.57
SIX3O95343 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
SIX3O95343 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SIX3O95343 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SIX3O95343 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.59■□□□□ 0.57
SIX3O95343 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
SIX3O95343 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SIX3O95343 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SIX3O95343 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.57
SIX3O95343 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
SIX3O95343 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SIX3O95343 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SIX3O95343 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
SIX3O95343 ESRRAP1-201ENST00000400596 1257 ntBASIC18.58■□□□□ 0.56
SIX3O95343 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.58■□□□□ 0.56
SIX3O95343 AC239809.2-201ENST00000415381 517 ntBASIC18.58■□□□□ 0.56
SIX3O95343 TSPY21P-201ENST00000433481 731 ntBASIC18.58■□□□□ 0.56
SIX3O95343 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.58■□□□□ 0.56
SIX3O95343 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.56
SIX3O95343 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.58■□□□□ 0.56
SIX3O95343 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.58■□□□□ 0.56
SIX3O95343 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SIX3O95343 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.58■□□□□ 0.56
SIX3O95343 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
SIX3O95343 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.58■□□□□ 0.56
SIX3O95343 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SIX3O95343 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
SIX3O95343 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SIX3O95343 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
SIX3O95343 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.58■□□□□ 0.56
SIX3O95343 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SIX3O95343 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.58■□□□□ 0.56
SIX3O95343 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SIX3O95343 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.57■□□□□ 0.56
SIX3O95343 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SIX3O95343 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.57■□□□□ 0.56
SIX3O95343 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.57■□□□□ 0.56
SIX3O95343 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SIX3O95343 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.57■□□□□ 0.56
SIX3O95343 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SIX3O95343 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SIX3O95343 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SIX3O95343 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SIX3O95343 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.57■□□□□ 0.56
SIX3O95343 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SIX3O95343 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.57■□□□□ 0.56
SIX3O95343 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SIX3O95343 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.57■□□□□ 0.56
SIX3O95343 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.57■□□□□ 0.56
SIX3O95343 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SIX3O95343 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SIX3O95343 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.57■□□□□ 0.56
SIX3O95343 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.57■□□□□ 0.56
SIX3O95343 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SIX3O95343 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.57■□□□□ 0.56
SIX3O95343 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SIX3O95343 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SIX3O95343 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX3O95343 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.56■□□□□ 0.56
SIX3O95343 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.56■□□□□ 0.56
SIX3O95343 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SIX3O95343 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SIX3O95343 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.56■□□□□ 0.56
SIX3O95343 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX3O95343 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.56■□□□□ 0.56
SIX3O95343 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.56■□□□□ 0.56
SIX3O95343 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
SIX3O95343 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.56■□□□□ 0.56
SIX3O95343 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SIX3O95343 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.56■□□□□ 0.56
SIX3O95343 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SIX3O95343 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
SIX3O95343 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX3O95343 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.56■□□□□ 0.56
SIX3O95343 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX3O95343 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX3O95343 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX3O95343 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX3O95343 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
SIX3O95343 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SIX3O95343 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX3O95343 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SIX3O95343 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX3O95343 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX3O95343 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX3O95343 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX3O95343 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
SIX3O95343 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms