Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.58■□□□□ 0.56
SDC3O75056 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SDC3O75056 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SDC3O75056 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.58■□□□□ 0.56
SDC3O75056 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
SDC3O75056 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SDC3O75056 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SDC3O75056 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SDC3O75056 PCDHAC2-203ENST00000615316 3011 ntBASIC18.58■□□□□ 0.56
SDC3O75056 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
SDC3O75056 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 GPAT2P1-201ENST00000444924 1672 ntBASIC18.57■□□□□ 0.56
SDC3O75056 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.57■□□□□ 0.56
SDC3O75056 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.57■□□□□ 0.56
SDC3O75056 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.57■□□□□ 0.56
SDC3O75056 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.57■□□□□ 0.56
SDC3O75056 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.57■□□□□ 0.56
SDC3O75056 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.57■□□□□ 0.56
SDC3O75056 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18.57■□□□□ 0.56
SDC3O75056 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.57■□□□□ 0.56
SDC3O75056 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.57■□□□□ 0.56
SDC3O75056 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
SDC3O75056 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.57■□□□□ 0.56
SDC3O75056 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.57■□□□□ 0.56
SDC3O75056 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SDC3O75056 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SDC3O75056 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SDC3O75056 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SDC3O75056 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.56■□□□□ 0.56
SDC3O75056 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.56■□□□□ 0.56
SDC3O75056 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SDC3O75056 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
SDC3O75056 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SDC3O75056 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SDC3O75056 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SDC3O75056 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
SDC3O75056 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SDC3O75056 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SDC3O75056 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.56■□□□□ 0.56
SDC3O75056 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.56■□□□□ 0.56
SDC3O75056 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.56■□□□□ 0.56
SDC3O75056 WDR88-203ENST00000592765 651 ntTSL 5 BASIC18.56■□□□□ 0.56
SDC3O75056 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SDC3O75056 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SDC3O75056 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.56■□□□□ 0.56
SDC3O75056 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.56■□□□□ 0.56
SDC3O75056 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SDC3O75056 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SDC3O75056 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SDC3O75056 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.56■□□□□ 0.56
SDC3O75056 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SDC3O75056 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.56■□□□□ 0.56
SDC3O75056 AC036111.1-201ENST00000533973 1582 ntBASIC18.55■□□□□ 0.56
SDC3O75056 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SDC3O75056 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
SDC3O75056 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.55■□□□□ 0.56
SDC3O75056 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.55■□□□□ 0.56
SDC3O75056 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SDC3O75056 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.55■□□□□ 0.56
SDC3O75056 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.55■□□□□ 0.56
SDC3O75056 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.55■□□□□ 0.56
SDC3O75056 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.55■□□□□ 0.56
SDC3O75056 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.55■□□□□ 0.56
SDC3O75056 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SDC3O75056 CLEC4GP1-201ENST00000596555 870 ntBASIC18.55■□□□□ 0.56
SDC3O75056 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SDC3O75056 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SDC3O75056 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SDC3O75056 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SDC3O75056 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SDC3O75056 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SDC3O75056 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
SDC3O75056 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
SDC3O75056 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SDC3O75056 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SDC3O75056 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SDC3O75056 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
SDC3O75056 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SDC3O75056 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SDC3O75056 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms