Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PHGDHO43175 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PHGDHO43175 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PHGDHO43175 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PHGDHO43175 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.92■□□□□ 0.62
PHGDHO43175 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.92■□□□□ 0.62
PHGDHO43175 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.92■□□□□ 0.62
PHGDHO43175 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.92■□□□□ 0.62
PHGDHO43175 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PHGDHO43175 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PHGDHO43175 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PHGDHO43175 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.92■□□□□ 0.62
PHGDHO43175 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PHGDHO43175 AL160286.2-201ENST00000567150 934 ntBASIC18.92■□□□□ 0.62
PHGDHO43175 AC069544.1-201ENST00000609399 999 ntBASIC18.92■□□□□ 0.62
PHGDHO43175 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
PHGDHO43175 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.92■□□□□ 0.62
PHGDHO43175 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PHGDHO43175 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PHGDHO43175 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PHGDHO43175 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PHGDHO43175 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PHGDHO43175 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.92■□□□□ 0.62
PHGDHO43175 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PHGDHO43175 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.91■□□□□ 0.62
PHGDHO43175 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PHGDHO43175 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
PHGDHO43175 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
PHGDHO43175 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.91■□□□□ 0.62
PHGDHO43175 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PHGDHO43175 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.91■□□□□ 0.62
PHGDHO43175 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
PHGDHO43175 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
PHGDHO43175 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PHGDHO43175 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
PHGDHO43175 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.91■□□□□ 0.62
PHGDHO43175 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
PHGDHO43175 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.91■□□□□ 0.62
PHGDHO43175 MTDHP1-201ENST00000605323 784 ntBASIC18.91■□□□□ 0.62
PHGDHO43175 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
PHGDHO43175 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.91■□□□□ 0.62
PHGDHO43175 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.91■□□□□ 0.62
PHGDHO43175 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PHGDHO43175 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
PHGDHO43175 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.91■□□□□ 0.62
PHGDHO43175 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.91■□□□□ 0.62
PHGDHO43175 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
PHGDHO43175 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PHGDHO43175 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
PHGDHO43175 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
PHGDHO43175 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PHGDHO43175 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.9■□□□□ 0.62
PHGDHO43175 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.9■□□□□ 0.62
PHGDHO43175 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PHGDHO43175 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PHGDHO43175 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PHGDHO43175 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PHGDHO43175 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.9■□□□□ 0.62
PHGDHO43175 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.9■□□□□ 0.62
PHGDHO43175 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.9■□□□□ 0.62
PHGDHO43175 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PHGDHO43175 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PHGDHO43175 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
PHGDHO43175 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PHGDHO43175 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.9■□□□□ 0.62
PHGDHO43175 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PHGDHO43175 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PHGDHO43175 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
PHGDHO43175 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.9■□□□□ 0.62
PHGDHO43175 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
PHGDHO43175 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.9■□□□□ 0.62
PHGDHO43175 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
PHGDHO43175 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
PHGDHO43175 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.9■□□□□ 0.62
PHGDHO43175 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
PHGDHO43175 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PHGDHO43175 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
PHGDHO43175 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PHGDHO43175 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PHGDHO43175 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
PHGDHO43175 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
PHGDHO43175 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
PHGDHO43175 AC005082.1-201ENST00000413042 2259 ntBASIC18.89■□□□□ 0.61
PHGDHO43175 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PHGDHO43175 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
PHGDHO43175 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PHGDHO43175 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PHGDHO43175 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
PHGDHO43175 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PHGDHO43175 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PHGDHO43175 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.89■□□□□ 0.61
PHGDHO43175 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
PHGDHO43175 TSPY23P-201ENST00000440136 739 ntBASIC18.89■□□□□ 0.61
PHGDHO43175 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.89■□□□□ 0.61
PHGDHO43175 AC026366.1-201ENST00000488803 879 ntBASIC18.89■□□□□ 0.61
PHGDHO43175 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.89■□□□□ 0.61
PHGDHO43175 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
PHGDHO43175 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PHGDHO43175 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PHGDHO43175 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms