Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.92■□□□□ 0.46
CACNA1AO00555 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1AO00555 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1AO00555 IGHGP-201ENST00000390555 1178 ntBASIC17.92■□□□□ 0.46
CACNA1AO00555 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1AO00555 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC17.92■□□□□ 0.46
CACNA1AO00555 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.92■□□□□ 0.46
CACNA1AO00555 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CACNA1AO00555 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1AO00555 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1AO00555 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1AO00555 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1AO00555 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
CACNA1AO00555 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.91■□□□□ 0.46
CACNA1AO00555 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1AO00555 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.91■□□□□ 0.46
CACNA1AO00555 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.91■□□□□ 0.46
CACNA1AO00555 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.91■□□□□ 0.46
CACNA1AO00555 AC027612.4-201ENST00000605371 583 ntBASIC17.91■□□□□ 0.46
CACNA1AO00555 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1AO00555 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1AO00555 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1AO00555 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1AO00555 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1AO00555 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
CACNA1AO00555 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
CACNA1AO00555 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1AO00555 AC015922.1-201ENST00000421102 1152 ntBASIC17.91■□□□□ 0.46
CACNA1AO00555 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.91■□□□□ 0.46
CACNA1AO00555 AC096582.2-201ENST00000510860 516 ntBASIC17.91■□□□□ 0.46
CACNA1AO00555 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.91■□□□□ 0.46
CACNA1AO00555 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1AO00555 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CACNA1AO00555 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1AO00555 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.91■□□□□ 0.46
CACNA1AO00555 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1AO00555 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1AO00555 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.9■□□□□ 0.46
CACNA1AO00555 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC17.9■□□□□ 0.46
CACNA1AO00555 RPS2P28-201ENST00000314255 741 ntBASIC17.9■□□□□ 0.46
CACNA1AO00555 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1AO00555 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1AO00555 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.9■□□□□ 0.46
CACNA1AO00555 RN7SL606P-201ENST00000472779 293 ntBASIC17.9■□□□□ 0.46
CACNA1AO00555 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.9■□□□□ 0.46
CACNA1AO00555 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.9■□□□□ 0.46
CACNA1AO00555 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.9■□□□□ 0.46
CACNA1AO00555 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC17.9■□□□□ 0.46
CACNA1AO00555 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1AO00555 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.9■□□□□ 0.46
CACNA1AO00555 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1AO00555 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1AO00555 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1AO00555 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CACNA1AO00555 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1AO00555 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
CACNA1AO00555 MIR4469-201ENST00000583919 79 ntBASIC17.9■□□□□ 0.46
CACNA1AO00555 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.9■□□□□ 0.46
CACNA1AO00555 AJ011932.1-201ENST00000621707 465 ntBASIC17.9■□□□□ 0.46
CACNA1AO00555 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC17.89■□□□□ 0.45
CACNA1AO00555 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CACNA1AO00555 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CACNA1AO00555 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
CACNA1AO00555 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CACNA1AO00555 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.89■□□□□ 0.45
CACNA1AO00555 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CACNA1AO00555 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.89■□□□□ 0.45
CACNA1AO00555 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.89■□□□□ 0.45
CACNA1AO00555 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
CACNA1AO00555 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CACNA1AO00555 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
CACNA1AO00555 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
CACNA1AO00555 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CACNA1AO00555 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CACNA1AO00555 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
CACNA1AO00555 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.89■□□□□ 0.45
CACNA1AO00555 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.89■□□□□ 0.45
CACNA1AO00555 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.89■□□□□ 0.45
CACNA1AO00555 PRSS29P-201ENST00000440800 595 ntBASIC17.89■□□□□ 0.45
CACNA1AO00555 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.89■□□□□ 0.45
CACNA1AO00555 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.89■□□□□ 0.45
CACNA1AO00555 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.89■□□□□ 0.45
CACNA1AO00555 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.89■□□□□ 0.45
CACNA1AO00555 AC124864.1-201ENST00000623408 392 ntBASIC17.89■□□□□ 0.45
CACNA1AO00555 AC008735.5-201ENST00000623544 497 ntBASIC17.89■□□□□ 0.45
CACNA1AO00555 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CACNA1AO00555 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CACNA1AO00555 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CACNA1AO00555 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CACNA1AO00555 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC17.88■□□□□ 0.45
CACNA1AO00555 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CACNA1AO00555 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CACNA1AO00555 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
CACNA1AO00555 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CACNA1AO00555 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.88■□□□□ 0.45
CACNA1AO00555 AC007967.2-201ENST00000432613 625 ntBASIC17.88■□□□□ 0.45
CACNA1AO00555 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.88■□□□□ 0.45
CACNA1AO00555 AC005829.1-201ENST00000570002 483 ntBASIC17.88■□□□□ 0.45
CACNA1AO00555 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
CACNA1AO00555 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms