Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AURKAPS2-201ENST00000454983 333 ntBASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 RNU6-521P-201ENST00000516663 105 ntBASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 MIR4512-201ENST00000583257 77 ntBASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 AL162431.4-201ENST00000604674 411 ntBASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 AC015914.2-201ENST00000618167 288 ntBASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 AC092376.2-201ENST00000622621 4116 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 SCARNA15-201ENST00000607520 4325 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 PHKBP1-201ENST00000450951 1951 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 AC126755.2-208ENST00000327792 462 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 AC138969.1-213ENST00000331436 462 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 Y_RNA.221-201ENST00000364248 96 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 RNA5SP223-201ENST00000365174 120 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 MIR105-1-201ENST00000385222 81 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 MIR589-201ENST00000385238 99 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 MIR1278-201ENST00000408753 81 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 SNORA36B-201ENST00000410438 131 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 RPL39P34-201ENST00000477141 156 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 RN7SL814P-201ENST00000487715 300 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 RNA5SP154-201ENST00000516193 111 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 CR383656.8-201ENST00000549046 145 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 AC006349.1-201ENST00000555526 235 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 MIR3921-201ENST00000577308 85 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 MIR4716-201ENST00000579628 84 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 RN7SL708P-201ENST00000580952 299 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 AC126915.2-201ENST00000610957 190 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 AL049767.1-202ENST00000637826 242 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 OFD1P6Y-202ENST00000451061 2724 ntBASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
VPS9D1Q9Y2B5 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 SNORA17.1-201ENST00000362945 126 ntBASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 Y_RNA.528-201ENST00000384575 108 ntBASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 Y_RNA.549-201ENST00000384657 102 ntBASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 RNA5SP339-201ENST00000390987 122 ntBASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 Y_RNA.587-201ENST00000391210 103 ntBASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 COX5BP7-201ENST00000414780 274 ntBASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 AL135786.1-201ENST00000415892 214 ntBASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 ATP6V0E1P4-201ENST00000427294 242 ntBASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 CKS1BP5-201ENST00000434172 273 ntBASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 OR2AO1P-201ENST00000476497 403 ntBASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 RNU6-703P-201ENST00000516946 107 ntBASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 RNA5SP230-201ENST00000517039 122 ntBASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 AC040958.1-201ENST00000561102 201 ntBASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 AC011471.1-201ENST00000585766 187 ntBASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 AC006272.2-201ENST00000594725 163 ntBASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 AL137843.1-201ENST00000605078 385 ntBASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 AL022345.2-201ENST00000606307 135 ntBASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 RNU6-94P-201ENST00000607728 107 ntBASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 MIR548AY-201ENST00000617669 107 ntBASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 MARK2P15-201ENST00000432204 2186 ntBASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.25□□□□□ -1.57
VPS9D1Q9Y2B5 AC093591.2-201ENST00000565254 3843 ntBASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 AC079741.1-201ENST00000321498 212 ntBASIC5.24□□□□□ -1.57
VPS9D1Q9Y2B5 Y_RNA.49-201ENST00000362714 112 ntBASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms