Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
PCDHGA1Q9Y5H4 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PCDHGA1Q9Y5H4 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
PCDHGA1Q9Y5H4 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.27■□□□□ 0.51
PCDHGA1Q9Y5H4 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.27■□□□□ 0.51
PCDHGA1Q9Y5H4 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
PCDHGA1Q9Y5H4 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
PCDHGA1Q9Y5H4 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
PCDHGA1Q9Y5H4 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 AC093525.10-201ENST00000625130 1569 ntBASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 AP002414.4-201ENST00000589764 1148 ntBASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHGA1Q9Y5H4 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 CHCHD2P8-201ENST00000429873 447 ntBASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 UNC93B7-201ENST00000509439 705 ntBASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHGA1Q9Y5H4 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 PVRIG2P-201ENST00000435460 978 ntBASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 AC024243.1-201ENST00000609234 778 ntBASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 AL162741.1-201ENST00000565563 1558 ntBASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHGA1Q9Y5H4 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms