Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 ECEL1P3-201ENST00000427961 737 ntBASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 REXO1L12P-201ENST00000622156 912 ntBASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 TFP1-202ENST00000475455 1573 ntBASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 ISG20-202ENST00000379224 540 ntTSL 3 BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 FP475955.4-201ENST00000623131 1990 ntBASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
LSM4Q9Y4Z0 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 AC211429.1-201ENST00000415277 523 ntBASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 KLF2-202ENST00000592003 564 ntTSL 3 BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 BICD1-207ENST00000551848 1962 ntBASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC15.22■□□□□ 0.03
LSM4Q9Y4Z0 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LSM4Q9Y4Z0 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms