Protein–RNA interactions for Protein: Q9NTX5

ECHDC1, Ethylmalonyl-CoA decarboxylase, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1Q9NTX5 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
ECHDC1Q9NTX5 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
ECHDC1Q9NTX5 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
ECHDC1Q9NTX5 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
ECHDC1Q9NTX5 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
ECHDC1Q9NTX5 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
ECHDC1Q9NTX5 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
ECHDC1Q9NTX5 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC23.2■■□□□ 1.3
ECHDC1Q9NTX5 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
ECHDC1Q9NTX5 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
ECHDC1Q9NTX5 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC23.2■■□□□ 1.3
ECHDC1Q9NTX5 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC23.2■■□□□ 1.3
ECHDC1Q9NTX5 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
ECHDC1Q9NTX5 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC23.2■■□□□ 1.3
ECHDC1Q9NTX5 MIR1238-201ENST00000408483 83 ntBASIC23.2■■□□□ 1.3
ECHDC1Q9NTX5 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
ECHDC1Q9NTX5 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
ECHDC1Q9NTX5 CYGB-204ENST00000589342 815 ntTSL 3 BASIC23.2■■□□□ 1.3
ECHDC1Q9NTX5 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
ECHDC1Q9NTX5 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC23.2■■□□□ 1.3
ECHDC1Q9NTX5 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
ECHDC1Q9NTX5 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
ECHDC1Q9NTX5 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ECHDC1Q9NTX5 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ECHDC1Q9NTX5 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC23.19■■□□□ 1.3
ECHDC1Q9NTX5 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC23.19■■□□□ 1.3
ECHDC1Q9NTX5 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
ECHDC1Q9NTX5 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
ECHDC1Q9NTX5 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
ECHDC1Q9NTX5 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
ECHDC1Q9NTX5 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
ECHDC1Q9NTX5 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
ECHDC1Q9NTX5 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
ECHDC1Q9NTX5 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC23.19■■□□□ 1.3
ECHDC1Q9NTX5 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC23.19■■□□□ 1.3
ECHDC1Q9NTX5 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
ECHDC1Q9NTX5 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ECHDC1Q9NTX5 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
ECHDC1Q9NTX5 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
ECHDC1Q9NTX5 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC23.19■■□□□ 1.3
ECHDC1Q9NTX5 AC098818.2-201ENST00000564925 2320 ntBASIC23.19■■□□□ 1.3
ECHDC1Q9NTX5 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
ECHDC1Q9NTX5 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC23.18■■□□□ 1.3
ECHDC1Q9NTX5 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
ECHDC1Q9NTX5 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
ECHDC1Q9NTX5 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
ECHDC1Q9NTX5 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
ECHDC1Q9NTX5 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC23.18■■□□□ 1.3
ECHDC1Q9NTX5 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC23.18■■□□□ 1.3
ECHDC1Q9NTX5 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
ECHDC1Q9NTX5 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC23.18■■□□□ 1.3
ECHDC1Q9NTX5 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC23.18■■□□□ 1.3
ECHDC1Q9NTX5 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
ECHDC1Q9NTX5 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
ECHDC1Q9NTX5 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
ECHDC1Q9NTX5 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC23.18■■□□□ 1.3
ECHDC1Q9NTX5 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
ECHDC1Q9NTX5 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC23.18■■□□□ 1.3
ECHDC1Q9NTX5 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 KRT8P3-201ENST00000519669 1449 ntBASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 USP39-202ENST00000409025 1946 ntTSL 5 BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC23.17■■□□□ 1.3
ECHDC1Q9NTX5 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
ECHDC1Q9NTX5 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
ECHDC1Q9NTX5 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
ECHDC1Q9NTX5 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
ECHDC1Q9NTX5 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC23.16■■□□□ 1.3
ECHDC1Q9NTX5 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC23.16■■□□□ 1.3
ECHDC1Q9NTX5 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC23.16■■□□□ 1.3
ECHDC1Q9NTX5 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
ECHDC1Q9NTX5 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC23.16■■□□□ 1.3
ECHDC1Q9NTX5 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
ECHDC1Q9NTX5 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC23.16■■□□□ 1.3
ECHDC1Q9NTX5 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
ECHDC1Q9NTX5 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC23.16■■□□□ 1.3
ECHDC1Q9NTX5 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC23.16■■□□□ 1.3
ECHDC1Q9NTX5 GLDC-219ENST00000640208 420 ntTSL 2 BASIC23.16■■□□□ 1.3
ECHDC1Q9NTX5 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
ECHDC1Q9NTX5 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
ECHDC1Q9NTX5 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms