Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CISHQ9NSE2 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CISHQ9NSE2 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CISHQ9NSE2 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CISHQ9NSE2 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
CISHQ9NSE2 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.32■□□□□ 0.84
CISHQ9NSE2 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CISHQ9NSE2 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CISHQ9NSE2 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CISHQ9NSE2 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CISHQ9NSE2 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CISHQ9NSE2 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.32■□□□□ 0.84
CISHQ9NSE2 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CISHQ9NSE2 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.32■□□□□ 0.84
CISHQ9NSE2 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CISHQ9NSE2 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CISHQ9NSE2 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CISHQ9NSE2 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CISHQ9NSE2 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CISHQ9NSE2 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CISHQ9NSE2 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CISHQ9NSE2 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CISHQ9NSE2 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.31■□□□□ 0.84
CISHQ9NSE2 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CISHQ9NSE2 AP005242.2-201ENST00000580065 1175 ntBASIC20.31■□□□□ 0.84
CISHQ9NSE2 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CISHQ9NSE2 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CISHQ9NSE2 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
CISHQ9NSE2 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CISHQ9NSE2 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CISHQ9NSE2 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.31■□□□□ 0.84
CISHQ9NSE2 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CISHQ9NSE2 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CISHQ9NSE2 AC018445.3-201ENST00000624177 1945 ntBASIC20.31■□□□□ 0.84
CISHQ9NSE2 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CISHQ9NSE2 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CISHQ9NSE2 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CISHQ9NSE2 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CISHQ9NSE2 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CISHQ9NSE2 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CISHQ9NSE2 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CISHQ9NSE2 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.3■□□□□ 0.84
CISHQ9NSE2 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CISHQ9NSE2 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CISHQ9NSE2 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CISHQ9NSE2 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.3■□□□□ 0.84
CISHQ9NSE2 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CISHQ9NSE2 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.3■□□□□ 0.84
CISHQ9NSE2 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.3■□□□□ 0.84
CISHQ9NSE2 AL390955.1-201ENST00000428694 934 ntBASIC20.3■□□□□ 0.84
CISHQ9NSE2 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.3■□□□□ 0.84
CISHQ9NSE2 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CISHQ9NSE2 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.3■□□□□ 0.84
CISHQ9NSE2 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CISHQ9NSE2 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CISHQ9NSE2 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CISHQ9NSE2 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CISHQ9NSE2 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CISHQ9NSE2 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CISHQ9NSE2 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.29■□□□□ 0.84
CISHQ9NSE2 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.29■□□□□ 0.84
CISHQ9NSE2 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CISHQ9NSE2 AC098818.2-201ENST00000564925 2320 ntBASIC20.29■□□□□ 0.84
CISHQ9NSE2 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.29■□□□□ 0.84
CISHQ9NSE2 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.29■□□□□ 0.84
CISHQ9NSE2 MIR1238-201ENST00000408483 83 ntBASIC20.29■□□□□ 0.84
CISHQ9NSE2 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CISHQ9NSE2 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CISHQ9NSE2 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.29■□□□□ 0.84
CISHQ9NSE2 FITM1-202ENST00000559294 800 ntBASIC20.29■□□□□ 0.84
CISHQ9NSE2 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.29■□□□□ 0.84
CISHQ9NSE2 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.29■□□□□ 0.84
CISHQ9NSE2 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CISHQ9NSE2 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
CISHQ9NSE2 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CISHQ9NSE2 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CISHQ9NSE2 AC087289.5-201ENST00000586076 3175 ntBASIC20.29■□□□□ 0.84
CISHQ9NSE2 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CISHQ9NSE2 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CISHQ9NSE2 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CISHQ9NSE2 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CISHQ9NSE2 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CISHQ9NSE2 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.28■□□□□ 0.84
CISHQ9NSE2 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CISHQ9NSE2 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.28■□□□□ 0.84
CISHQ9NSE2 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CISHQ9NSE2 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CISHQ9NSE2 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CISHQ9NSE2 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CISHQ9NSE2 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CISHQ9NSE2 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CISHQ9NSE2 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CISHQ9NSE2 BX323043.1-201ENST00000641006 1765 ntBASIC20.28■□□□□ 0.84
CISHQ9NSE2 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CISHQ9NSE2 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CISHQ9NSE2 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CISHQ9NSE2 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CISHQ9NSE2 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CISHQ9NSE2 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.27■□□□□ 0.84
CISHQ9NSE2 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms