Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 AC097493.4-201ENST00000641197 219 ntBASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 LINC01023-201ENST00000606054 436 ntBASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 AC012306.2-201ENST00000609350 630 ntBASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM39Q9HCM9 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 TSPY14P-201ENST00000303979 915 ntBASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 CA15P1-201ENST00000481698 905 ntBASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 EGLN1P1-201ENST00000531623 762 ntBASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TRIM39Q9HCM9 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 LINC01568-207ENST00000641790 1380 ntBASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 ECEL1P3-201ENST00000427961 737 ntBASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 SLC25A1P2-201ENST00000430693 912 ntBASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 AC145285.6-201ENST00000604632 637 ntBASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 TEX21P-204ENST00000641479 1693 ntBASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms