Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 AC009113.1-201ENST00000570267 2443 ntBASIC19.66■□□□□ 0.74
PCDH9Q9HC56 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 WIZP1-201ENST00000531444 2299 ntBASIC19.66■□□□□ 0.74
PCDH9Q9HC56 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PCDH9Q9HC56 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 C1QL1P1-201ENST00000568105 661 ntBASIC19.65■□□□□ 0.74
PCDH9Q9HC56 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH9Q9HC56 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
PCDH9Q9HC56 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.64■□□□□ 0.74
PCDH9Q9HC56 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
PCDH9Q9HC56 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
PCDH9Q9HC56 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
PCDH9Q9HC56 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDH9Q9HC56 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
PCDH9Q9HC56 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PCDH9Q9HC56 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDH9Q9HC56 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDH9Q9HC56 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.64■□□□□ 0.73
PCDH9Q9HC56 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms