Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SPENQ96T58 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.18■□□□□ 0.34
SPENQ96T58 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.18■□□□□ 0.34
SPENQ96T58 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
SPENQ96T58 IL11-204ENST00000590625 1028 ntTSL 2 BASIC17.18■□□□□ 0.34
SPENQ96T58 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.18■□□□□ 0.34
SPENQ96T58 AC079602.3-201ENST00000623931 403 ntBASIC17.18■□□□□ 0.34
SPENQ96T58 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SPENQ96T58 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SPENQ96T58 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.18■□□□□ 0.34
SPENQ96T58 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SPENQ96T58 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SPENQ96T58 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SPENQ96T58 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.18■□□□□ 0.34
SPENQ96T58 AFG3L1P-217ENST00000557444 2447 ntBASIC17.18■□□□□ 0.34
SPENQ96T58 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
SPENQ96T58 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SPENQ96T58 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.17■□□□□ 0.34
SPENQ96T58 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SPENQ96T58 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.17■□□□□ 0.34
SPENQ96T58 MRPL3P1-201ENST00000400109 1033 ntBASIC17.17■□□□□ 0.34
SPENQ96T58 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.17■□□□□ 0.34
SPENQ96T58 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SPENQ96T58 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SPENQ96T58 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SPENQ96T58 TSSC2-201ENST00000450217 709 ntBASIC17.17■□□□□ 0.34
SPENQ96T58 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.17■□□□□ 0.34
SPENQ96T58 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SPENQ96T58 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SPENQ96T58 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SPENQ96T58 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SPENQ96T58 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SPENQ96T58 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SPENQ96T58 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.17■□□□□ 0.34
SPENQ96T58 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
SPENQ96T58 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SPENQ96T58 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
SPENQ96T58 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SPENQ96T58 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.17■□□□□ 0.34
SPENQ96T58 HLA-A-201ENST00000376802 1334 ntBASIC17.17■□□□□ 0.34
SPENQ96T58 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SPENQ96T58 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
SPENQ96T58 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SPENQ96T58 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SPENQ96T58 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SPENQ96T58 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SPENQ96T58 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SPENQ96T58 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SPENQ96T58 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SPENQ96T58 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SPENQ96T58 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.16■□□□□ 0.34
SPENQ96T58 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SPENQ96T58 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SPENQ96T58 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.16■□□□□ 0.34
SPENQ96T58 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SPENQ96T58 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.16■□□□□ 0.34
SPENQ96T58 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SPENQ96T58 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SPENQ96T58 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
SPENQ96T58 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.16■□□□□ 0.34
SPENQ96T58 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.16■□□□□ 0.34
SPENQ96T58 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.16■□□□□ 0.34
SPENQ96T58 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC17.16■□□□□ 0.34
SPENQ96T58 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SPENQ96T58 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
SPENQ96T58 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.15■□□□□ 0.34
SPENQ96T58 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SPENQ96T58 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SPENQ96T58 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SPENQ96T58 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.15■□□□□ 0.34
SPENQ96T58 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SPENQ96T58 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
SPENQ96T58 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.15■□□□□ 0.34
SPENQ96T58 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SPENQ96T58 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.15■□□□□ 0.34
SPENQ96T58 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SPENQ96T58 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SPENQ96T58 EFS-203ENST00000429593 2610 ntTSL 2 BASIC17.15■□□□□ 0.34
SPENQ96T58 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SPENQ96T58 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SPENQ96T58 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SPENQ96T58 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.15■□□□□ 0.34
SPENQ96T58 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SPENQ96T58 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.15■□□□□ 0.34
SPENQ96T58 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
SPENQ96T58 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SPENQ96T58 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SPENQ96T58 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SPENQ96T58 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SPENQ96T58 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SPENQ96T58 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SPENQ96T58 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SPENQ96T58 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.15■□□□□ 0.34
SPENQ96T58 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
SPENQ96T58 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.15■□□□□ 0.34
SPENQ96T58 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
SPENQ96T58 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SPENQ96T58 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.14■□□□□ 0.34
SPENQ96T58 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
SPENQ96T58 Z83836.1-201ENST00000624605 1642 ntBASIC17.14■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms