Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CFAP54Q96N23 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CFAP54Q96N23 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CFAP54Q96N23 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CFAP54Q96N23 AC233702.3-201ENST00000578656 1387 ntBASIC18.67■□□□□ 0.58
CFAP54Q96N23 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CFAP54Q96N23 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CFAP54Q96N23 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.67■□□□□ 0.58
CFAP54Q96N23 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CFAP54Q96N23 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CFAP54Q96N23 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CFAP54Q96N23 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CFAP54Q96N23 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
CFAP54Q96N23 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CFAP54Q96N23 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CFAP54Q96N23 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CFAP54Q96N23 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CFAP54Q96N23 COX20P2-201ENST00000452636 358 ntBASIC18.67■□□□□ 0.58
CFAP54Q96N23 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.67■□□□□ 0.58
CFAP54Q96N23 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.67■□□□□ 0.58
CFAP54Q96N23 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CFAP54Q96N23 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CFAP54Q96N23 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CFAP54Q96N23 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CFAP54Q96N23 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CFAP54Q96N23 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CFAP54Q96N23 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CFAP54Q96N23 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CFAP54Q96N23 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.67■□□□□ 0.58
CFAP54Q96N23 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CFAP54Q96N23 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CFAP54Q96N23 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CFAP54Q96N23 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CFAP54Q96N23 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.66■□□□□ 0.58
CFAP54Q96N23 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.66■□□□□ 0.58
CFAP54Q96N23 AF186996.4-201ENST00000467186 377 ntBASIC18.66■□□□□ 0.58
CFAP54Q96N23 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CFAP54Q96N23 AC092364.2-202ENST00000597012 1073 ntBASIC18.66■□□□□ 0.58
CFAP54Q96N23 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.66■□□□□ 0.58
CFAP54Q96N23 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.66■□□□□ 0.58
CFAP54Q96N23 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.66■□□□□ 0.58
CFAP54Q96N23 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.66■□□□□ 0.58
CFAP54Q96N23 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CFAP54Q96N23 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC18.66■□□□□ 0.58
CFAP54Q96N23 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CFAP54Q96N23 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CFAP54Q96N23 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CFAP54Q96N23 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CFAP54Q96N23 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
CFAP54Q96N23 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.66■□□□□ 0.58
CFAP54Q96N23 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CFAP54Q96N23 Z83836.1-201ENST00000624605 1642 ntBASIC18.66■□□□□ 0.58
CFAP54Q96N23 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CFAP54Q96N23 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.66■□□□□ 0.58
CFAP54Q96N23 AL157384.1-201ENST00000445995 2473 ntBASIC18.66■□□□□ 0.58
CFAP54Q96N23 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CFAP54Q96N23 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC18.65■□□□□ 0.58
CFAP54Q96N23 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CFAP54Q96N23 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.65■□□□□ 0.58
CFAP54Q96N23 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CFAP54Q96N23 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CFAP54Q96N23 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CFAP54Q96N23 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
CFAP54Q96N23 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CFAP54Q96N23 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CFAP54Q96N23 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CFAP54Q96N23 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CFAP54Q96N23 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CFAP54Q96N23 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CFAP54Q96N23 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.65■□□□□ 0.58
CFAP54Q96N23 SPCS2P1-201ENST00000561636 679 ntBASIC18.65■□□□□ 0.58
CFAP54Q96N23 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CFAP54Q96N23 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CFAP54Q96N23 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CFAP54Q96N23 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CFAP54Q96N23 METTL21AP1-201ENST00000438852 635 ntBASIC18.65■□□□□ 0.58
CFAP54Q96N23 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.65■□□□□ 0.58
CFAP54Q96N23 ORC5-208ENST00000626700 344 ntTSL 3 BASIC18.65■□□□□ 0.58
CFAP54Q96N23 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CFAP54Q96N23 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CFAP54Q96N23 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
CFAP54Q96N23 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.64■□□□□ 0.58
CFAP54Q96N23 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CFAP54Q96N23 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CFAP54Q96N23 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CFAP54Q96N23 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.64■□□□□ 0.57
CFAP54Q96N23 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.64■□□□□ 0.57
CFAP54Q96N23 AC099336.1-202ENST00000602961 463 ntBASIC18.64■□□□□ 0.57
CFAP54Q96N23 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CFAP54Q96N23 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CFAP54Q96N23 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CFAP54Q96N23 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.64■□□□□ 0.57
CFAP54Q96N23 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC18.64■□□□□ 0.57
CFAP54Q96N23 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.64■□□□□ 0.57
CFAP54Q96N23 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CFAP54Q96N23 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.64■□□□□ 0.57
CFAP54Q96N23 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.64■□□□□ 0.57
CFAP54Q96N23 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CFAP54Q96N23 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CFAP54Q96N23 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms