Protein–RNA interactions for Protein: Q92547

TOPBP1, DNA topoisomerase 2-binding protein 1, humanhuman

Predictions only

Length 1,522 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1Q92547 AC010240.3-201ENST00000607688 395 ntBASIC31.95■■■□□ 2.71
TOPBP1Q92547 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC31.95■■■□□ 2.71
TOPBP1Q92547 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
TOPBP1Q92547 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
TOPBP1Q92547 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
TOPBP1Q92547 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC31.95■■■□□ 2.71
TOPBP1Q92547 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC31.95■■■□□ 2.71
TOPBP1Q92547 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
TOPBP1Q92547 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC31.95■■■□□ 2.7
TOPBP1Q92547 AC005332.3-201ENST00000589904 676 ntBASIC31.95■■■□□ 2.7
TOPBP1Q92547 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
TOPBP1Q92547 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
TOPBP1Q92547 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC31.94■■■□□ 2.7
TOPBP1Q92547 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC31.94■■■□□ 2.7
TOPBP1Q92547 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC31.94■■■□□ 2.7
TOPBP1Q92547 KRT8P3-201ENST00000519669 1449 ntBASIC31.94■■■□□ 2.7
TOPBP1Q92547 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC31.94■■■□□ 2.7
TOPBP1Q92547 TLE1-202ENST00000376484 666 ntTSL 3 BASIC31.94■■■□□ 2.7
TOPBP1Q92547 AC091607.1-201ENST00000490318 1060 ntBASIC31.94■■■□□ 2.7
TOPBP1Q92547 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC31.94■■■□□ 2.7
TOPBP1Q92547 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC31.94■■■□□ 2.7
TOPBP1Q92547 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
TOPBP1Q92547 NSUN5P1-202ENST00000421140 1535 ntBASIC31.94■■■□□ 2.7
TOPBP1Q92547 NSUN5P2-203ENST00000457352 1529 ntBASIC31.94■■■□□ 2.7
TOPBP1Q92547 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC31.94■■■□□ 2.7
TOPBP1Q92547 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
TOPBP1Q92547 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC31.94■■■□□ 2.7
TOPBP1Q92547 ME2-216ENST00000639850 2331 ntTSL 5 BASIC31.93■■■□□ 2.7
TOPBP1Q92547 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC31.93■■■□□ 2.7
TOPBP1Q92547 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
TOPBP1Q92547 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC31.93■■■□□ 2.7
TOPBP1Q92547 AC026310.3-201ENST00000625186 2373 ntBASIC31.93■■■□□ 2.7
TOPBP1Q92547 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
TOPBP1Q92547 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC31.93■■■□□ 2.7
TOPBP1Q92547 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC31.93■■■□□ 2.7
TOPBP1Q92547 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC31.93■■■□□ 2.7
TOPBP1Q92547 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC31.93■■■□□ 2.7
TOPBP1Q92547 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC31.93■■■□□ 2.7
TOPBP1Q92547 AC243591.1-201ENST00000452967 1364 ntBASIC31.93■■■□□ 2.7
TOPBP1Q92547 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
TOPBP1Q92547 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC31.92■■■□□ 2.7
TOPBP1Q92547 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC31.92■■■□□ 2.7
TOPBP1Q92547 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
TOPBP1Q92547 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC31.92■■■□□ 2.7
TOPBP1Q92547 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC31.92■■■□□ 2.7
TOPBP1Q92547 KRT18P58-201ENST00000527480 1120 ntBASIC31.92■■■□□ 2.7
TOPBP1Q92547 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC31.92■■■□□ 2.7
TOPBP1Q92547 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC31.92■■■□□ 2.7
TOPBP1Q92547 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
TOPBP1Q92547 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC31.92■■■□□ 2.7
TOPBP1Q92547 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC31.92■■■□□ 2.7
TOPBP1Q92547 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
TOPBP1Q92547 SDHAP1-207ENST00000440850 2000 ntBASIC31.92■■■□□ 2.7
TOPBP1Q92547 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC31.92■■■□□ 2.7
TOPBP1Q92547 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC31.92■■■□□ 2.7
TOPBP1Q92547 AC133561.1-201ENST00000568600 2415 ntBASIC31.91■■■□□ 2.7
TOPBP1Q92547 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC31.91■■■□□ 2.7
TOPBP1Q92547 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC31.91■■■□□ 2.7
TOPBP1Q92547 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
TOPBP1Q92547 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
TOPBP1Q92547 NUS1P2-201ENST00000417358 873 ntBASIC31.91■■■□□ 2.7
TOPBP1Q92547 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC31.91■■■□□ 2.7
TOPBP1Q92547 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC31.91■■■□□ 2.7
TOPBP1Q92547 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
TOPBP1Q92547 CCNC-219ENST00000627680 896 ntTSL 5 BASIC31.91■■■□□ 2.7
TOPBP1Q92547 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC31.91■■■□□ 2.7
TOPBP1Q92547 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
TOPBP1Q92547 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC31.91■■■□□ 2.7
TOPBP1Q92547 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
TOPBP1Q92547 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
TOPBP1Q92547 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC31.91■■■□□ 2.7
TOPBP1Q92547 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC31.9■■■□□ 2.7
TOPBP1Q92547 HOXB1-202ENST00000577092 1414 ntBASIC31.9■■■□□ 2.7
TOPBP1Q92547 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC31.9■■■□□ 2.7
TOPBP1Q92547 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
TOPBP1Q92547 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
TOPBP1Q92547 MIR1233-2-201ENST00000408138 82 ntBASIC31.9■■■□□ 2.7
TOPBP1Q92547 MIR1233-1-201ENST00000408722 82 ntBASIC31.9■■■□□ 2.7
TOPBP1Q92547 AC104390.1-201ENST00000555663 520 ntBASIC31.9■■■□□ 2.7
TOPBP1Q92547 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC31.9■■■□□ 2.7
TOPBP1Q92547 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC31.9■■■□□ 2.7
TOPBP1Q92547 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
TOPBP1Q92547 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
TOPBP1Q92547 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC31.9■■■□□ 2.7
TOPBP1Q92547 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
TOPBP1Q92547 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC31.9■■■□□ 2.7
TOPBP1Q92547 AP003733.1-201ENST00000491725 852 ntBASIC31.9■■■□□ 2.7
TOPBP1Q92547 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC31.9■■■□□ 2.7
TOPBP1Q92547 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC31.9■■■□□ 2.7
TOPBP1Q92547 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC31.9■■■□□ 2.7
TOPBP1Q92547 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC31.9■■■□□ 2.7
TOPBP1Q92547 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC31.9■■■□□ 2.7
TOPBP1Q92547 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC31.9■■■□□ 2.7
TOPBP1Q92547 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC31.9■■■□□ 2.7
TOPBP1Q92547 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC31.89■■■□□ 2.7
TOPBP1Q92547 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC31.89■■■□□ 2.7
TOPBP1Q92547 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC31.89■■■□□ 2.7
TOPBP1Q92547 AC020907.5-201ENST00000624372 1936 ntBASIC31.89■■■□□ 2.7
TOPBP1Q92547 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
TOPBP1Q92547 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC31.89■■■□□ 2.7
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms