Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NKX2-3Q8TAU0 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
NKX2-3Q8TAU0 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
NKX2-3Q8TAU0 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NKX2-3Q8TAU0 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC22.57■■□□□ 1.2
NKX2-3Q8TAU0 ECEL1P2-202ENST00000465689 757 ntBASIC22.57■■□□□ 1.2
NKX2-3Q8TAU0 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC22.57■■□□□ 1.2
NKX2-3Q8TAU0 PP7080-204ENST00000510714 601 ntTSL 3 BASIC22.57■■□□□ 1.2
NKX2-3Q8TAU0 SLC25A1P4-201ENST00000567977 778 ntBASIC22.57■■□□□ 1.2
NKX2-3Q8TAU0 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC22.57■■□□□ 1.2
NKX2-3Q8TAU0 MYC-208ENST00000641036 567 ntBASIC22.57■■□□□ 1.2
NKX2-3Q8TAU0 GAS2L1P1-201ENST00000420145 1480 ntBASIC22.57■■□□□ 1.2
NKX2-3Q8TAU0 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NKX2-3Q8TAU0 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NKX2-3Q8TAU0 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NKX2-3Q8TAU0 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NKX2-3Q8TAU0 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
NKX2-3Q8TAU0 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
NKX2-3Q8TAU0 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
NKX2-3Q8TAU0 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 IPPK-202ENST00000375522 882 ntTSL 3 BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NKX2-3Q8TAU0 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 IRX1P1-201ENST00000438849 1838 ntBASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 AC141586.3-201ENST00000562166 1838 ntBASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 AL031133.1-201ENST00000406807 723 ntBASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 AL450487.1-201ENST00000426799 995 ntBASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 MFAP1P1-201ENST00000442257 1255 ntBASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 CKBP1-201ENST00000565489 1086 ntBASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
NKX2-3Q8TAU0 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 VPS72-207ENST00000640458 689 ntTSL 5 BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
NKX2-3Q8TAU0 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
NKX2-3Q8TAU0 TBC1D3P2-202ENST00000577902 1649 ntBASIC22.53■■□□□ 1.2
NKX2-3Q8TAU0 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
NKX2-3Q8TAU0 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC22.53■■□□□ 1.2
NKX2-3Q8TAU0 AL161938.1-201ENST00000569833 2180 ntBASIC22.53■■□□□ 1.2
NKX2-3Q8TAU0 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
NKX2-3Q8TAU0 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NKX2-3Q8TAU0 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
NKX2-3Q8TAU0 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms