Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SCUBE3Q8IX30 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SCUBE3Q8IX30 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC20.03■□□□□ 0.8
SCUBE3Q8IX30 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.03■□□□□ 0.8
SCUBE3Q8IX30 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SCUBE3Q8IX30 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SCUBE3Q8IX30 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SCUBE3Q8IX30 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SCUBE3Q8IX30 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
SCUBE3Q8IX30 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SCUBE3Q8IX30 AC096733.2-201ENST00000609937 1394 ntBASIC20.03■□□□□ 0.8
SCUBE3Q8IX30 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SCUBE3Q8IX30 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SCUBE3Q8IX30 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
SCUBE3Q8IX30 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SCUBE3Q8IX30 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
SCUBE3Q8IX30 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SCUBE3Q8IX30 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SCUBE3Q8IX30 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SCUBE3Q8IX30 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SCUBE3Q8IX30 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SCUBE3Q8IX30 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 MIR1238-201ENST00000408483 83 ntBASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 MFAP1P1-201ENST00000442257 1255 ntBASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 AC120498.9-201ENST00000339021 3867 ntBASIC20.02■□□□□ 0.8
SCUBE3Q8IX30 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.02■□□□□ 0.79
SCUBE3Q8IX30 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
SCUBE3Q8IX30 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SCUBE3Q8IX30 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SCUBE3Q8IX30 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SCUBE3Q8IX30 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.02■□□□□ 0.79
SCUBE3Q8IX30 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SCUBE3Q8IX30 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.01■□□□□ 0.79
SCUBE3Q8IX30 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SCUBE3Q8IX30 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SCUBE3Q8IX30 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SCUBE3Q8IX30 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
SCUBE3Q8IX30 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SCUBE3Q8IX30 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.01■□□□□ 0.79
SCUBE3Q8IX30 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SCUBE3Q8IX30 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SCUBE3Q8IX30 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SCUBE3Q8IX30 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.01■□□□□ 0.79
SCUBE3Q8IX30 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SCUBE3Q8IX30 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SCUBE3Q8IX30 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.01■□□□□ 0.79
SCUBE3Q8IX30 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
SCUBE3Q8IX30 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SCUBE3Q8IX30 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.01■□□□□ 0.79
SCUBE3Q8IX30 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SCUBE3Q8IX30 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SCUBE3Q8IX30 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SCUBE3Q8IX30 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SCUBE3Q8IX30 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
SCUBE3Q8IX30 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20■□□□□ 0.79
SCUBE3Q8IX30 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20■□□□□ 0.79
SCUBE3Q8IX30 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SCUBE3Q8IX30 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20■□□□□ 0.79
SCUBE3Q8IX30 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20■□□□□ 0.79
SCUBE3Q8IX30 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20■□□□□ 0.79
SCUBE3Q8IX30 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SCUBE3Q8IX30 FITM1-202ENST00000559294 800 ntBASIC20■□□□□ 0.79
SCUBE3Q8IX30 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20■□□□□ 0.79
SCUBE3Q8IX30 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20■□□□□ 0.79
SCUBE3Q8IX30 AC079416.2-201ENST00000625035 1193 ntBASIC20■□□□□ 0.79
SCUBE3Q8IX30 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SCUBE3Q8IX30 AC087289.5-201ENST00000586076 3175 ntBASIC20■□□□□ 0.79
SCUBE3Q8IX30 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
SCUBE3Q8IX30 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20■□□□□ 0.79
SCUBE3Q8IX30 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20■□□□□ 0.79
SCUBE3Q8IX30 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20■□□□□ 0.79
SCUBE3Q8IX30 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20■□□□□ 0.79
SCUBE3Q8IX30 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SCUBE3Q8IX30 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SCUBE3Q8IX30 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SCUBE3Q8IX30 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SCUBE3Q8IX30 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.99■□□□□ 0.79
SCUBE3Q8IX30 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SCUBE3Q8IX30 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
SCUBE3Q8IX30 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SCUBE3Q8IX30 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SCUBE3Q8IX30 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms