Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VRK3Q8IV63 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VRK3Q8IV63 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VRK3Q8IV63 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VRK3Q8IV63 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VRK3Q8IV63 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VRK3Q8IV63 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
VRK3Q8IV63 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VRK3Q8IV63 UNC93B2-201ENST00000285383 730 ntBASIC18.62■□□□□ 0.57
VRK3Q8IV63 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VRK3Q8IV63 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.62■□□□□ 0.57
VRK3Q8IV63 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
VRK3Q8IV63 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
VRK3Q8IV63 CRYGFP-201ENST00000418459 633 ntBASIC18.62■□□□□ 0.57
VRK3Q8IV63 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.62■□□□□ 0.57
VRK3Q8IV63 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.62■□□□□ 0.57
VRK3Q8IV63 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VRK3Q8IV63 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VRK3Q8IV63 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VRK3Q8IV63 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.62■□□□□ 0.57
VRK3Q8IV63 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.62■□□□□ 0.57
VRK3Q8IV63 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.62■□□□□ 0.57
VRK3Q8IV63 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VRK3Q8IV63 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
VRK3Q8IV63 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
VRK3Q8IV63 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VRK3Q8IV63 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VRK3Q8IV63 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VRK3Q8IV63 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
VRK3Q8IV63 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VRK3Q8IV63 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.61■□□□□ 0.57
VRK3Q8IV63 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
VRK3Q8IV63 AC006333.2-201ENST00000607957 2099 ntBASIC18.61■□□□□ 0.57
VRK3Q8IV63 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VRK3Q8IV63 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
VRK3Q8IV63 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
VRK3Q8IV63 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
VRK3Q8IV63 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VRK3Q8IV63 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VRK3Q8IV63 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VRK3Q8IV63 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.61■□□□□ 0.57
VRK3Q8IV63 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.61■□□□□ 0.57
VRK3Q8IV63 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
VRK3Q8IV63 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VRK3Q8IV63 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VRK3Q8IV63 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VRK3Q8IV63 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.61■□□□□ 0.57
VRK3Q8IV63 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
VRK3Q8IV63 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VRK3Q8IV63 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VRK3Q8IV63 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
VRK3Q8IV63 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.6■□□□□ 0.57
VRK3Q8IV63 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.6■□□□□ 0.57
VRK3Q8IV63 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VRK3Q8IV63 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VRK3Q8IV63 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VRK3Q8IV63 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.6■□□□□ 0.57
VRK3Q8IV63 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VRK3Q8IV63 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.6■□□□□ 0.57
VRK3Q8IV63 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
VRK3Q8IV63 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VRK3Q8IV63 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.6■□□□□ 0.57
VRK3Q8IV63 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
VRK3Q8IV63 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.6■□□□□ 0.57
VRK3Q8IV63 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VRK3Q8IV63 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VRK3Q8IV63 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
VRK3Q8IV63 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
VRK3Q8IV63 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VRK3Q8IV63 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
VRK3Q8IV63 BX323043.1-201ENST00000641006 1765 ntBASIC18.6■□□□□ 0.57
VRK3Q8IV63 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
VRK3Q8IV63 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VRK3Q8IV63 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VRK3Q8IV63 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VRK3Q8IV63 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VRK3Q8IV63 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.59■□□□□ 0.57
VRK3Q8IV63 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
VRK3Q8IV63 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VRK3Q8IV63 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.59■□□□□ 0.57
VRK3Q8IV63 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VRK3Q8IV63 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VRK3Q8IV63 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.59■□□□□ 0.57
VRK3Q8IV63 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VRK3Q8IV63 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VRK3Q8IV63 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VRK3Q8IV63 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VRK3Q8IV63 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VRK3Q8IV63 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VRK3Q8IV63 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VRK3Q8IV63 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.59■□□□□ 0.57
VRK3Q8IV63 MIR1238-201ENST00000408483 83 ntBASIC18.59■□□□□ 0.57
VRK3Q8IV63 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VRK3Q8IV63 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.59■□□□□ 0.57
VRK3Q8IV63 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VRK3Q8IV63 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VRK3Q8IV63 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.59■□□□□ 0.57
VRK3Q8IV63 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VRK3Q8IV63 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VRK3Q8IV63 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms