Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 TK1-205ENST00000590862 642 ntTSL 3 BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 AC112907.3-201ENST00000577781 2400 ntBASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 AP001271.2-201ENST00000624018 1556 ntBASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 MIR1233-2-201ENST00000408138 82 ntBASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 MIR1233-1-201ENST00000408722 82 ntBASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 DRAXINP1-201ENST00000437611 948 ntBASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 PENK-208ENST00000523051 772 ntTSL 5 BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 AC079834.2-201ENST00000609776 1949 ntBASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 AL512408.1-201ENST00000569378 2000 ntBASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 MRPL3P1-201ENST00000400109 1033 ntBASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 MIR4674-201ENST00000582457 87 ntBASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 AC120114.3-201ENST00000611923 658 ntBASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 HLA-A-201ENST00000376802 1334 ntBASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
CSPG4Q6UVK1 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 MIR662-201ENST00000384847 95 ntBASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 AP002414.4-201ENST00000589764 1148 ntBASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 BX640515.1-201ENST00000617215 977 ntBASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 AL031008.1-201ENST00000619963 541 ntBASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 KRT18P1-202ENST00000452408 1331 ntBASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 TSPY12P-201ENST00000421279 868 ntBASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 TSSC2-201ENST00000450217 709 ntBASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms