Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
KRT40Q6A162 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
KRT40Q6A162 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC22.07■■□□□ 1.12
KRT40Q6A162 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
KRT40Q6A162 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
KRT40Q6A162 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
KRT40Q6A162 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
KRT40Q6A162 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC22.06■■□□□ 1.12
KRT40Q6A162 AL020996.1-203ENST00000536896 2307 ntBASIC22.06■■□□□ 1.12
KRT40Q6A162 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
KRT40Q6A162 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
KRT40Q6A162 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
KRT40Q6A162 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
KRT40Q6A162 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
KRT40Q6A162 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
KRT40Q6A162 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC22.06■■□□□ 1.12
KRT40Q6A162 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC22.06■■□□□ 1.12
KRT40Q6A162 TSPY21P-201ENST00000433481 731 ntBASIC22.06■■□□□ 1.12
KRT40Q6A162 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
KRT40Q6A162 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
KRT40Q6A162 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
KRT40Q6A162 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC22.06■■□□□ 1.12
KRT40Q6A162 PENK-204ENST00000518770 863 ntTSL 2 BASIC22.06■■□□□ 1.12
KRT40Q6A162 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
KRT40Q6A162 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
KRT40Q6A162 RARRES2P10-201ENST00000564312 460 ntBASIC22.06■■□□□ 1.12
KRT40Q6A162 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC22.06■■□□□ 1.12
KRT40Q6A162 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC22.06■■□□□ 1.12
KRT40Q6A162 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
KRT40Q6A162 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
KRT40Q6A162 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC22.06■■□□□ 1.12
KRT40Q6A162 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC22.06■■□□□ 1.12
KRT40Q6A162 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC22.06■■□□□ 1.12
KRT40Q6A162 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC22.06■■□□□ 1.12
KRT40Q6A162 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
KRT40Q6A162 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
KRT40Q6A162 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC22.06■■□□□ 1.12
KRT40Q6A162 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
KRT40Q6A162 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
KRT40Q6A162 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC22.06■■□□□ 1.12
KRT40Q6A162 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
KRT40Q6A162 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC22.05■■□□□ 1.12
KRT40Q6A162 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC22.05■■□□□ 1.12
KRT40Q6A162 GAS2L1P1-201ENST00000420145 1480 ntBASIC22.05■■□□□ 1.12
KRT40Q6A162 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
KRT40Q6A162 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
KRT40Q6A162 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
KRT40Q6A162 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
KRT40Q6A162 PTPA-216ENST00000432651 857 ntTSL 2 BASIC22.05■■□□□ 1.12
KRT40Q6A162 KSR1P1-201ENST00000446298 240 ntBASIC22.05■■□□□ 1.12
KRT40Q6A162 AF186192.3-201ENST00000583427 947 ntBASIC22.05■■□□□ 1.12
KRT40Q6A162 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC22.05■■□□□ 1.12
KRT40Q6A162 AP001412.1-201ENST00000608405 714 ntBASIC22.05■■□□□ 1.12
KRT40Q6A162 ABBA01031674.1-201ENST00000635145 728 ntBASIC22.05■■□□□ 1.12
KRT40Q6A162 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
KRT40Q6A162 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
KRT40Q6A162 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
KRT40Q6A162 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
KRT40Q6A162 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
KRT40Q6A162 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
KRT40Q6A162 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC22.05■■□□□ 1.12
KRT40Q6A162 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
KRT40Q6A162 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
KRT40Q6A162 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
KRT40Q6A162 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
KRT40Q6A162 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
KRT40Q6A162 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC22.04■■□□□ 1.12
KRT40Q6A162 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
KRT40Q6A162 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
KRT40Q6A162 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
KRT40Q6A162 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
KRT40Q6A162 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
KRT40Q6A162 PPP1R14BP5-201ENST00000440334 435 ntBASIC22.04■■□□□ 1.12
KRT40Q6A162 GLRB-205ENST00000512619 728 ntTSL 3 BASIC22.04■■□□□ 1.12
KRT40Q6A162 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC22.04■■□□□ 1.12
KRT40Q6A162 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC22.04■■□□□ 1.12
KRT40Q6A162 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
KRT40Q6A162 AC131212.4-201ENST00000623606 975 ntBASIC22.04■■□□□ 1.12
KRT40Q6A162 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC22.04■■□□□ 1.12
KRT40Q6A162 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
KRT40Q6A162 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC22.04■■□□□ 1.12
KRT40Q6A162 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC22.04■■□□□ 1.12
KRT40Q6A162 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
KRT40Q6A162 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
KRT40Q6A162 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
KRT40Q6A162 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
KRT40Q6A162 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
KRT40Q6A162 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
KRT40Q6A162 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
KRT40Q6A162 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
KRT40Q6A162 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
KRT40Q6A162 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
KRT40Q6A162 AL353807.1-201ENST00000427475 662 ntBASIC22.03■■□□□ 1.12
KRT40Q6A162 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC22.03■■□□□ 1.12
KRT40Q6A162 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
KRT40Q6A162 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC22.03■■□□□ 1.12
KRT40Q6A162 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC22.03■■□□□ 1.12
KRT40Q6A162 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC22.03■■□□□ 1.12
KRT40Q6A162 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC22.03■■□□□ 1.12
KRT40Q6A162 USP39-202ENST00000409025 1946 ntTSL 5 BASIC22.03■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms