Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 AC087499.1-201ENST00000418141 1075 ntBASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 NIFKP9-201ENST00000419265 221 ntBASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 AL445675.2-201ENST00000620291 557 ntBASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 AC133561.5-201ENST00000635547 218 ntBASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 IRX1P1-201ENST00000438849 1838 ntBASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 TNXA-203ENST00000507684 2038 ntBASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTCHD3Q3KNS1 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 NUDT16P1-203ENST00000513809 620 ntBASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 LINC01023-201ENST00000606054 436 ntBASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 AL020996.1-203ENST00000536896 2307 ntBASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTCHD3Q3KNS1 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 KRT8P41-201ENST00000533985 1514 ntBASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 FP475955.4-201ENST00000623131 1990 ntBASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 KSR1P1-201ENST00000446298 240 ntBASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms