Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
H3F3AP84243 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
H3F3AP84243 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
H3F3AP84243 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
H3F3AP84243 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
H3F3AP84243 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.04■□□□□ 0.32
H3F3AP84243 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
H3F3AP84243 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
H3F3AP84243 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
H3F3AP84243 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.03■□□□□ 0.32
H3F3AP84243 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
H3F3AP84243 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.03■□□□□ 0.32
H3F3AP84243 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
H3F3AP84243 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
H3F3AP84243 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
H3F3AP84243 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
H3F3AP84243 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
H3F3AP84243 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
H3F3AP84243 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
H3F3AP84243 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
H3F3AP84243 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
H3F3AP84243 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
H3F3AP84243 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
H3F3AP84243 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.03■□□□□ 0.32
H3F3AP84243 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.03■□□□□ 0.32
H3F3AP84243 AC097488.1-201ENST00000507834 756 ntBASIC17.03■□□□□ 0.32
H3F3AP84243 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
H3F3AP84243 AP005242.2-201ENST00000580065 1175 ntBASIC17.03■□□□□ 0.32
H3F3AP84243 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.03■□□□□ 0.32
H3F3AP84243 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
H3F3AP84243 AC079598.2-202ENST00000546624 1451 ntBASIC17.03■□□□□ 0.32
H3F3AP84243 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.03■□□□□ 0.32
H3F3AP84243 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
H3F3AP84243 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
H3F3AP84243 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.03■□□□□ 0.32
H3F3AP84243 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
H3F3AP84243 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.03■□□□□ 0.32
H3F3AP84243 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
H3F3AP84243 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.03■□□□□ 0.32
H3F3AP84243 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.03■□□□□ 0.32
H3F3AP84243 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.02■□□□□ 0.32
H3F3AP84243 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
H3F3AP84243 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
H3F3AP84243 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.02■□□□□ 0.32
H3F3AP84243 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
H3F3AP84243 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.02■□□□□ 0.32
H3F3AP84243 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
H3F3AP84243 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
H3F3AP84243 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.02■□□□□ 0.32
H3F3AP84243 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
H3F3AP84243 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
H3F3AP84243 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.02■□□□□ 0.32
H3F3AP84243 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.02■□□□□ 0.32
H3F3AP84243 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
H3F3AP84243 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
H3F3AP84243 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
H3F3AP84243 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.02■□□□□ 0.32
H3F3AP84243 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.02■□□□□ 0.32
H3F3AP84243 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.02■□□□□ 0.32
H3F3AP84243 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.02■□□□□ 0.32
H3F3AP84243 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.02■□□□□ 0.32
H3F3AP84243 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.02■□□□□ 0.32
H3F3AP84243 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.02■□□□□ 0.32
H3F3AP84243 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
H3F3AP84243 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
H3F3AP84243 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
H3F3AP84243 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.31
H3F3AP84243 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
H3F3AP84243 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
H3F3AP84243 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
H3F3AP84243 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
H3F3AP84243 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.01■□□□□ 0.31
H3F3AP84243 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.01■□□□□ 0.31
H3F3AP84243 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
H3F3AP84243 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
H3F3AP84243 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
H3F3AP84243 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.01■□□□□ 0.31
H3F3AP84243 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
H3F3AP84243 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
H3F3AP84243 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.01■□□□□ 0.31
H3F3AP84243 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
H3F3AP84243 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
H3F3AP84243 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
H3F3AP84243 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.01■□□□□ 0.31
H3F3AP84243 TSPY15P-201ENST00000457163 923 ntBASIC17.01■□□□□ 0.31
H3F3AP84243 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
H3F3AP84243 FITM1-202ENST00000559294 800 ntBASIC17.01■□□□□ 0.31
H3F3AP84243 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.01■□□□□ 0.31
H3F3AP84243 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.01■□□□□ 0.31
H3F3AP84243 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.01■□□□□ 0.31
H3F3AP84243 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
H3F3AP84243 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
H3F3AP84243 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
H3F3AP84243 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
H3F3AP84243 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
H3F3AP84243 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
H3F3AP84243 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
H3F3AP84243 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
H3F3AP84243 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
H3F3AP84243 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms