Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PRKDCP78527 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC13.79□□□□□ -0.2
PRKDCP78527 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PRKDCP78527 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC13.79□□□□□ -0.2
PRKDCP78527 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
PRKDCP78527 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC13.79□□□□□ -0.2
PRKDCP78527 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
PRKDCP78527 AL591424.1-201ENST00000442569 1213 ntBASIC13.79□□□□□ -0.2
PRKDCP78527 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
PRKDCP78527 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC13.79□□□□□ -0.2
PRKDCP78527 COX20P2-201ENST00000452636 358 ntBASIC13.79□□□□□ -0.2
PRKDCP78527 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC13.79□□□□□ -0.2
PRKDCP78527 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC13.79□□□□□ -0.2
PRKDCP78527 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
PRKDCP78527 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PRKDCP78527 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
PRKDCP78527 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
PRKDCP78527 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
PRKDCP78527 ERF-202ENST00000440177 2032 ntTSL 2 BASIC13.79□□□□□ -0.2
PRKDCP78527 CASK-201ENST00000378154 2494 ntTSL 5 BASIC13.79□□□□□ -0.2
PRKDCP78527 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC13.79□□□□□ -0.2
PRKDCP78527 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PRKDCP78527 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PRKDCP78527 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PRKDCP78527 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC13.79□□□□□ -0.2
PRKDCP78527 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC13.79□□□□□ -0.2
PRKDCP78527 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
PRKDCP78527 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
PRKDCP78527 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC13.78□□□□□ -0.2
PRKDCP78527 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PRKDCP78527 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PRKDCP78527 BCRP1-201ENST00000444246 691 ntBASIC13.78□□□□□ -0.2
PRKDCP78527 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC13.78□□□□□ -0.2
PRKDCP78527 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC13.78□□□□□ -0.2
PRKDCP78527 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PRKDCP78527 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
PRKDCP78527 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
PRKDCP78527 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
PRKDCP78527 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
PRKDCP78527 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PRKDCP78527 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC13.78□□□□□ -0.2
PRKDCP78527 WDR53-203ENST00000429115 683 ntTSL 2 BASIC13.78□□□□□ -0.2
PRKDCP78527 KRT18P23-201ENST00000435622 1283 ntBASIC13.78□□□□□ -0.2
PRKDCP78527 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC13.78□□□□□ -0.2
PRKDCP78527 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
PRKDCP78527 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PRKDCP78527 AC012640.2-201ENST00000561606 901 ntBASIC13.78□□□□□ -0.2
PRKDCP78527 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC13.78□□□□□ -0.2
PRKDCP78527 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC13.78□□□□□ -0.2
PRKDCP78527 AC106028.4-201ENST00000614509 607 ntBASIC13.78□□□□□ -0.2
PRKDCP78527 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
PRKDCP78527 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
PRKDCP78527 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
PRKDCP78527 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PRKDCP78527 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PRKDCP78527 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC13.78□□□□□ -0.2
PRKDCP78527 AC009533.2-201ENST00000543664 586 ntBASIC13.78□□□□□ -0.2
PRKDCP78527 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC13.78□□□□□ -0.2
PRKDCP78527 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
PRKDCP78527 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
PRKDCP78527 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
PRKDCP78527 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
PRKDCP78527 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
PRKDCP78527 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
PRKDCP78527 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.2
PRKDCP78527 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.2
PRKDCP78527 AC096582.2-201ENST00000510860 516 ntBASIC13.77□□□□□ -0.2
PRKDCP78527 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC13.77□□□□□ -0.2
PRKDCP78527 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
PRKDCP78527 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC13.77□□□□□ -0.21
PRKDCP78527 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
PRKDCP78527 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
PRKDCP78527 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
PRKDCP78527 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC13.77□□□□□ -0.21
PRKDCP78527 CNN2P11-201ENST00000429351 262 ntBASIC13.77□□□□□ -0.21
PRKDCP78527 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC13.77□□□□□ -0.21
PRKDCP78527 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC13.77□□□□□ -0.21
PRKDCP78527 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC13.77□□□□□ -0.21
PRKDCP78527 AC008608.2-201ENST00000606089 416 ntBASIC13.77□□□□□ -0.21
PRKDCP78527 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
PRKDCP78527 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
PRKDCP78527 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
PRKDCP78527 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
PRKDCP78527 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC13.77□□□□□ -0.21
PRKDCP78527 AC093909.1-201ENST00000504731 1122 ntBASIC13.77□□□□□ -0.21
PRKDCP78527 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC13.77□□□□□ -0.21
PRKDCP78527 AL355877.3-201ENST00000622820 899 ntBASIC13.77□□□□□ -0.21
PRKDCP78527 PLK5-205ENST00000642079 1969 ntBASIC13.77□□□□□ -0.21
PRKDCP78527 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
PRKDCP78527 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
PRKDCP78527 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
PRKDCP78527 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
PRKDCP78527 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
PRKDCP78527 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
PRKDCP78527 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC13.76□□□□□ -0.21
PRKDCP78527 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC13.76□□□□□ -0.21
PRKDCP78527 AL591684.3-201ENST00000605187 298 ntBASIC13.76□□□□□ -0.21
PRKDCP78527 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
PRKDCP78527 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC13.76□□□□□ -0.21
PRKDCP78527 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms