Protein–RNA interactions for Protein: P61073

CXCR4, C-X-C chemokine receptor type 4, humanhuman

Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4P61073 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CXCR4P61073 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CXCR4P61073 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CXCR4P61073 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CXCR4P61073 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC17.36■□□□□ 0.37
CXCR4P61073 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
CXCR4P61073 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.36■□□□□ 0.37
CXCR4P61073 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CXCR4P61073 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CXCR4P61073 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CXCR4P61073 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CXCR4P61073 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCR4P61073 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CXCR4P61073 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CXCR4P61073 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCR4P61073 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCR4P61073 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC17.35■□□□□ 0.37
CXCR4P61073 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CXCR4P61073 AC006015.1-201ENST00000429970 570 ntBASIC17.35■□□□□ 0.37
CXCR4P61073 APTR-203ENST00000430801 583 ntTSL 5 BASIC17.35■□□□□ 0.37
CXCR4P61073 HES2-205ENST00000487437 968 ntTSL 3 BASIC17.35■□□□□ 0.37
CXCR4P61073 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC17.35■□□□□ 0.37
CXCR4P61073 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC17.35■□□□□ 0.37
CXCR4P61073 AC231657.2-201ENST00000624556 255 ntBASIC17.35■□□□□ 0.37
CXCR4P61073 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCR4P61073 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCR4P61073 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCR4P61073 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17.35■□□□□ 0.37
CXCR4P61073 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CXCR4P61073 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCR4P61073 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCR4P61073 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CXCR4P61073 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
CXCR4P61073 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCR4P61073 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CXCR4P61073 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCR4P61073 SIRPAP1-201ENST00000448467 1770 ntBASIC17.35■□□□□ 0.37
CXCR4P61073 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CXCR4P61073 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CXCR4P61073 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CXCR4P61073 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
CXCR4P61073 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCR4P61073 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CXCR4P61073 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CXCR4P61073 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCR4P61073 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CXCR4P61073 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCR4P61073 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.35■□□□□ 0.37
CXCR4P61073 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCR4P61073 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
CXCR4P61073 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCR4P61073 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.34■□□□□ 0.37
CXCR4P61073 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CXCR4P61073 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCR4P61073 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCR4P61073 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCR4P61073 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCR4P61073 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CXCR4P61073 KRT17P1-201ENST00000399211 1546 ntBASIC17.34■□□□□ 0.37
CXCR4P61073 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCR4P61073 AC007322.1-201ENST00000426983 750 ntBASIC17.34■□□□□ 0.37
CXCR4P61073 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCR4P61073 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC17.34■□□□□ 0.37
CXCR4P61073 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
CXCR4P61073 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CXCR4P61073 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCR4P61073 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC17.34■□□□□ 0.37
CXCR4P61073 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CXCR4P61073 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CXCR4P61073 BID-214ENST00000617586 542 ntTSL 5 BASIC17.34■□□□□ 0.37
CXCR4P61073 OR10C1-204ENST00000622521 1039 ntBASIC17.34■□□□□ 0.37
CXCR4P61073 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.34■□□□□ 0.37
CXCR4P61073 PARP1-210ENST00000629232 477 ntTSL 5 BASIC17.34■□□□□ 0.37
CXCR4P61073 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC17.34■□□□□ 0.37
CXCR4P61073 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCR4P61073 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CXCR4P61073 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCR4P61073 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCR4P61073 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
CXCR4P61073 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CXCR4P61073 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CXCR4P61073 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CXCR4P61073 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.33■□□□□ 0.37
CXCR4P61073 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
CXCR4P61073 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CXCR4P61073 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
CXCR4P61073 AC139713.2-201ENST00000641328 2723 ntBASIC17.33■□□□□ 0.36
CXCR4P61073 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CXCR4P61073 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CXCR4P61073 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC17.33■□□□□ 0.36
CXCR4P61073 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CXCR4P61073 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC17.33■□□□□ 0.36
CXCR4P61073 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
CXCR4P61073 SLC25A6P5-201ENST00000435663 894 ntBASIC17.33■□□□□ 0.36
CXCR4P61073 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC17.33■□□□□ 0.36
CXCR4P61073 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.33■□□□□ 0.36
CXCR4P61073 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CXCR4P61073 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CXCR4P61073 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.36
CXCR4P61073 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms