Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.41■□□□□ 0.86
COL4A4P53420 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.41■□□□□ 0.86
COL4A4P53420 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC20.41■□□□□ 0.86
COL4A4P53420 AC012615.1-201ENST00000565797 1299 ntBASIC20.41■□□□□ 0.86
COL4A4P53420 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL4A4P53420 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
COL4A4P53420 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
COL4A4P53420 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC20.41■□□□□ 0.86
COL4A4P53420 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.4■□□□□ 0.86
COL4A4P53420 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.4■□□□□ 0.86
COL4A4P53420 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL4A4P53420 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL4A4P53420 CHCHD2P8-201ENST00000429873 447 ntBASIC20.4■□□□□ 0.86
COL4A4P53420 TSSC2-201ENST00000450217 709 ntBASIC20.4■□□□□ 0.86
COL4A4P53420 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC20.4■□□□□ 0.86
COL4A4P53420 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
COL4A4P53420 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20.4■□□□□ 0.86
COL4A4P53420 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL4A4P53420 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL4A4P53420 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL4A4P53420 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.4■□□□□ 0.86
COL4A4P53420 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL4A4P53420 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
COL4A4P53420 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL4A4P53420 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.39■□□□□ 0.86
COL4A4P53420 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL4A4P53420 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL4A4P53420 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A4P53420 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A4P53420 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
COL4A4P53420 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.39■□□□□ 0.85
COL4A4P53420 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A4P53420 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A4P53420 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A4P53420 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A4P53420 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.39■□□□□ 0.85
COL4A4P53420 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A4P53420 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A4P53420 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
COL4A4P53420 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.38■□□□□ 0.85
COL4A4P53420 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.38■□□□□ 0.85
COL4A4P53420 AP002414.4-201ENST00000589764 1148 ntBASIC20.38■□□□□ 0.85
COL4A4P53420 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A4P53420 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A4P53420 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
COL4A4P53420 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.38■□□□□ 0.85
COL4A4P53420 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A4P53420 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A4P53420 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A4P53420 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A4P53420 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.38■□□□□ 0.85
COL4A4P53420 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A4P53420 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.38■□□□□ 0.85
COL4A4P53420 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A4P53420 AC034232.1-201ENST00000506026 1064 ntBASIC20.38■□□□□ 0.85
COL4A4P53420 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC20.38■□□□□ 0.85
COL4A4P53420 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC20.38■□□□□ 0.85
COL4A4P53420 AC104692.2-201ENST00000603054 253 ntBASIC20.38■□□□□ 0.85
COL4A4P53420 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
COL4A4P53420 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.38■□□□□ 0.85
COL4A4P53420 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A4P53420 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A4P53420 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A4P53420 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.37■□□□□ 0.85
COL4A4P53420 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.37■□□□□ 0.85
COL4A4P53420 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
COL4A4P53420 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A4P53420 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A4P53420 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
COL4A4P53420 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A4P53420 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A4P53420 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A4P53420 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC20.37■□□□□ 0.85
COL4A4P53420 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.37■□□□□ 0.85
COL4A4P53420 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC20.37■□□□□ 0.85
COL4A4P53420 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.37■□□□□ 0.85
COL4A4P53420 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.37■□□□□ 0.85
COL4A4P53420 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.37■□□□□ 0.85
COL4A4P53420 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A4P53420 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.37■□□□□ 0.85
COL4A4P53420 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A4P53420 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.37■□□□□ 0.85
COL4A4P53420 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.37■□□□□ 0.85
COL4A4P53420 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A4P53420 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.37■□□□□ 0.85
COL4A4P53420 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.37■□□□□ 0.85
COL4A4P53420 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.37■□□□□ 0.85
COL4A4P53420 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A4P53420 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A4P53420 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A4P53420 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A4P53420 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A4P53420 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
COL4A4P53420 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC20.36■□□□□ 0.85
COL4A4P53420 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.36■□□□□ 0.85
COL4A4P53420 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.36■□□□□ 0.85
COL4A4P53420 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.36■□□□□ 0.85
COL4A4P53420 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.36■□□□□ 0.85
COL4A4P53420 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A4P53420 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms