Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX2P48431 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX2P48431 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
SOX2P48431 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX2P48431 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SOX2P48431 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC16.76■□□□□ 0.27
SOX2P48431 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX2P48431 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX2P48431 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX2P48431 GGT1-206ENST00000404223 952 ntTSL 2 BASIC16.76■□□□□ 0.27
SOX2P48431 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC16.76■□□□□ 0.27
SOX2P48431 RPS2P52-201ENST00000469610 820 ntBASIC16.76■□□□□ 0.27
SOX2P48431 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC16.76■□□□□ 0.27
SOX2P48431 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX2P48431 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX2P48431 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
SOX2P48431 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX2P48431 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX2P48431 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
SOX2P48431 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX2P48431 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC16.76■□□□□ 0.27
SOX2P48431 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX2P48431 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
SOX2P48431 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
SOX2P48431 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SOX2P48431 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX2P48431 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
SOX2P48431 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.75■□□□□ 0.27
SOX2P48431 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SOX2P48431 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
SOX2P48431 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC16.75■□□□□ 0.27
SOX2P48431 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SOX2P48431 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX2P48431 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX2P48431 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX2P48431 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX2P48431 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC16.75■□□□□ 0.27
SOX2P48431 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC16.75■□□□□ 0.27
SOX2P48431 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC16.75■□□□□ 0.27
SOX2P48431 AC026271.2-201ENST00000428091 497 ntBASIC16.75■□□□□ 0.27
SOX2P48431 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC16.75■□□□□ 0.27
SOX2P48431 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SOX2P48431 AL133373.2-201ENST00000623187 2828 ntBASIC16.75■□□□□ 0.27
SOX2P48431 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX2P48431 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX2P48431 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX2P48431 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX2P48431 AP006587.1-201ENST00000534129 1502 ntBASIC16.75■□□□□ 0.27
SOX2P48431 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC16.75■□□□□ 0.27
SOX2P48431 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX2P48431 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX2P48431 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SOX2P48431 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.74■□□□□ 0.27
SOX2P48431 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.74■□□□□ 0.27
SOX2P48431 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
SOX2P48431 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC16.74■□□□□ 0.27
SOX2P48431 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX2P48431 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC16.74■□□□□ 0.27
SOX2P48431 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX2P48431 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
SOX2P48431 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
SOX2P48431 KRT8P8-201ENST00000434750 1448 ntBASIC16.74■□□□□ 0.27
SOX2P48431 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX2P48431 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX2P48431 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX2P48431 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX2P48431 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX2P48431 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX2P48431 AC073210.2-201ENST00000430369 194 ntBASIC16.74■□□□□ 0.27
SOX2P48431 AL162430.1-201ENST00000480705 870 ntBASIC16.74■□□□□ 0.27
SOX2P48431 AF201337.1-201ENST00000520239 748 ntBASIC16.74■□□□□ 0.27
SOX2P48431 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC16.74■□□□□ 0.27
SOX2P48431 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.74■□□□□ 0.27
SOX2P48431 ANKRD20A6P-201ENST00000618763 204 ntBASIC16.74■□□□□ 0.27
SOX2P48431 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX2P48431 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SOX2P48431 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
SOX2P48431 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
SOX2P48431 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
SOX2P48431 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX2P48431 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SOX2P48431 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC16.74■□□□□ 0.27
SOX2P48431 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX2P48431 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX2P48431 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.73■□□□□ 0.27
SOX2P48431 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.73■□□□□ 0.27
SOX2P48431 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
SOX2P48431 UBQLN4P1-201ENST00000461599 1801 ntBASIC16.73■□□□□ 0.27
SOX2P48431 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX2P48431 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX2P48431 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX2P48431 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.73■□□□□ 0.27
SOX2P48431 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SOX2P48431 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC16.73■□□□□ 0.27
SOX2P48431 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
SOX2P48431 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC16.73■□□□□ 0.27
SOX2P48431 NME6-213ENST00000451657 871 ntTSL 2 BASIC16.73■□□□□ 0.27
SOX2P48431 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC16.73■□□□□ 0.27
SOX2P48431 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC16.73■□□□□ 0.27
SOX2P48431 RARRES2P6-201ENST00000567333 442 ntBASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms