Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTPN9P43378 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.8■□□□□ 0.76
PTPN9P43378 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTPN9P43378 KRT8P3-201ENST00000519669 1449 ntBASIC19.8■□□□□ 0.76
PTPN9P43378 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
PTPN9P43378 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.8■□□□□ 0.76
PTPN9P43378 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
PTPN9P43378 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PTPN9P43378 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.8■□□□□ 0.76
PTPN9P43378 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PTPN9P43378 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.8■□□□□ 0.76
PTPN9P43378 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.8■□□□□ 0.76
PTPN9P43378 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTPN9P43378 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.8■□□□□ 0.76
PTPN9P43378 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.8■□□□□ 0.76
PTPN9P43378 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PTPN9P43378 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTPN9P43378 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.8■□□□□ 0.76
PTPN9P43378 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
PTPN9P43378 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.8■□□□□ 0.76
PTPN9P43378 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.79■□□□□ 0.76
PTPN9P43378 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN9P43378 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.79■□□□□ 0.76
PTPN9P43378 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN9P43378 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN9P43378 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN9P43378 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN9P43378 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN9P43378 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN9P43378 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
PTPN9P43378 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN9P43378 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN9P43378 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.79■□□□□ 0.76
PTPN9P43378 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.79■□□□□ 0.76
PTPN9P43378 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN9P43378 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
PTPN9P43378 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
PTPN9P43378 AC097488.1-201ENST00000507834 756 ntBASIC19.79■□□□□ 0.76
PTPN9P43378 SLC25A1P4-201ENST00000567977 778 ntBASIC19.79■□□□□ 0.76
PTPN9P43378 MIR4497-201ENST00000583208 89 ntBASIC19.79■□□□□ 0.76
PTPN9P43378 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.79■□□□□ 0.76
PTPN9P43378 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
PTPN9P43378 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.79■□□□□ 0.76
PTPN9P43378 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.79■□□□□ 0.76
PTPN9P43378 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN9P43378 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.79■□□□□ 0.76
PTPN9P43378 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
PTPN9P43378 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN9P43378 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN9P43378 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN9P43378 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN9P43378 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.79■□□□□ 0.76
PTPN9P43378 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
PTPN9P43378 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.79■□□□□ 0.76
PTPN9P43378 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN9P43378 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
PTPN9P43378 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.78■□□□□ 0.76
PTPN9P43378 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTPN9P43378 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PTPN9P43378 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTPN9P43378 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PTPN9P43378 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTPN9P43378 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.78■□□□□ 0.76
PTPN9P43378 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.78■□□□□ 0.76
PTPN9P43378 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.78■□□□□ 0.76
PTPN9P43378 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PTPN9P43378 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.78■□□□□ 0.76
PTPN9P43378 MFAP1P1-201ENST00000442257 1255 ntBASIC19.78■□□□□ 0.76
PTPN9P43378 RBM17P1-201ENST00000453646 1190 ntBASIC19.78■□□□□ 0.76
PTPN9P43378 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.78■□□□□ 0.76
PTPN9P43378 AP005242.2-201ENST00000580065 1175 ntBASIC19.78■□□□□ 0.76
PTPN9P43378 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTPN9P43378 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.78■□□□□ 0.76
PTPN9P43378 AC083906.6-201ENST00000641366 219 ntBASIC19.78■□□□□ 0.76
PTPN9P43378 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTPN9P43378 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.78■□□□□ 0.76
PTPN9P43378 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
PTPN9P43378 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
PTPN9P43378 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PTPN9P43378 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTPN9P43378 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTPN9P43378 KRT17P2-201ENST00000300992 1314 ntBASIC19.77■□□□□ 0.76
PTPN9P43378 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTPN9P43378 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
PTPN9P43378 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PTPN9P43378 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PTPN9P43378 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
PTPN9P43378 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
PTPN9P43378 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTPN9P43378 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.77■□□□□ 0.76
PTPN9P43378 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
PTPN9P43378 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTPN9P43378 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
PTPN9P43378 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.77■□□□□ 0.76
PTPN9P43378 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PTPN9P43378 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.77■□□□□ 0.76
PTPN9P43378 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
PTPN9P43378 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.77■□□□□ 0.76
PTPN9P43378 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.77■□□□□ 0.76
PTPN9P43378 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms