Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN4P29074 AL354751.1-201ENST00000412768 1863 ntBASIC19.09■□□□□ 0.65
PTPN4P29074 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN4P29074 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN4P29074 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.09■□□□□ 0.65
PTPN4P29074 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN4P29074 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.09■□□□□ 0.65
PTPN4P29074 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
PTPN4P29074 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.09■□□□□ 0.65
PTPN4P29074 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
PTPN4P29074 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN4P29074 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.09■□□□□ 0.65
PTPN4P29074 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN4P29074 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN4P29074 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN4P29074 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN4P29074 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN4P29074 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.09■□□□□ 0.65
PTPN4P29074 AC120498.8-201ENST00000614275 531 ntBASIC19.09■□□□□ 0.65
PTPN4P29074 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.09■□□□□ 0.65
PTPN4P29074 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN4P29074 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN4P29074 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN4P29074 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.09■□□□□ 0.65
PTPN4P29074 WIZP1-201ENST00000531444 2299 ntBASIC19.09■□□□□ 0.65
PTPN4P29074 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN4P29074 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.09■□□□□ 0.65
PTPN4P29074 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN4P29074 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.09■□□□□ 0.65
PTPN4P29074 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.09■□□□□ 0.65
PTPN4P29074 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN4P29074 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN4P29074 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.09■□□□□ 0.65
PTPN4P29074 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
PTPN4P29074 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PTPN4P29074 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PTPN4P29074 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.08■□□□□ 0.65
PTPN4P29074 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.65
PTPN4P29074 AC068880.1-201ENST00000507289 2297 ntBASIC19.08■□□□□ 0.65
PTPN4P29074 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC19.08■□□□□ 0.65
PTPN4P29074 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PTPN4P29074 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PTPN4P29074 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PTPN4P29074 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
PTPN4P29074 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.08■□□□□ 0.65
PTPN4P29074 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.65
PTPN4P29074 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PTPN4P29074 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PTPN4P29074 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
PTPN4P29074 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN4P29074 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN4P29074 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN4P29074 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN4P29074 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN4P29074 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN4P29074 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
PTPN4P29074 AL390719.1-204ENST00000412397 1219 ntBASIC19.08■□□□□ 0.64
PTPN4P29074 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.08■□□□□ 0.64
PTPN4P29074 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.64
PTPN4P29074 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN4P29074 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.08■□□□□ 0.64
PTPN4P29074 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN4P29074 MIR4497-201ENST00000583208 89 ntBASIC19.08■□□□□ 0.64
PTPN4P29074 Z99916.2-201ENST00000604037 246 ntBASIC19.08■□□□□ 0.64
PTPN4P29074 MTDHP1-201ENST00000605323 784 ntBASIC19.08■□□□□ 0.64
PTPN4P29074 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN4P29074 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN4P29074 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN4P29074 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
PTPN4P29074 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN4P29074 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN4P29074 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN4P29074 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN4P29074 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN4P29074 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
PTPN4P29074 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN4P29074 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.07■□□□□ 0.64
PTPN4P29074 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.07■□□□□ 0.64
PTPN4P29074 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN4P29074 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN4P29074 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN4P29074 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN4P29074 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
PTPN4P29074 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
PTPN4P29074 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.07■□□□□ 0.64
PTPN4P29074 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.07■□□□□ 0.64
PTPN4P29074 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.07■□□□□ 0.64
PTPN4P29074 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN4P29074 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN4P29074 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.07■□□□□ 0.64
PTPN4P29074 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.07■□□□□ 0.64
PTPN4P29074 AC006557.6-201ENST00000623071 864 ntBASIC19.07■□□□□ 0.64
PTPN4P29074 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.07■□□□□ 0.64
PTPN4P29074 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN4P29074 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN4P29074 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.07■□□□□ 0.64
PTPN4P29074 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
PTPN4P29074 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.07■□□□□ 0.64
PTPN4P29074 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN4P29074 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms