Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PRSS44-201ENST00000515154 1146 ntBASIC17.45■□□□□ 0.38
MSX1P28360 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.45■□□□□ 0.38
MSX1P28360 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.45■□□□□ 0.38
MSX1P28360 FITM1-202ENST00000559294 800 ntBASIC17.45■□□□□ 0.38
MSX1P28360 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
MSX1P28360 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSX1P28360 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
MSX1P28360 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSX1P28360 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.45■□□□□ 0.38
MSX1P28360 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSX1P28360 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSX1P28360 KRT18P22-201ENST00000402024 1347 ntBASIC17.45■□□□□ 0.38
MSX1P28360 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSX1P28360 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSX1P28360 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MSX1P28360 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.45■□□□□ 0.38
MSX1P28360 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.45■□□□□ 0.38
MSX1P28360 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.44■□□□□ 0.38
MSX1P28360 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.44■□□□□ 0.38
MSX1P28360 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSX1P28360 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSX1P28360 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSX1P28360 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
MSX1P28360 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSX1P28360 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSX1P28360 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
MSX1P28360 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.44■□□□□ 0.38
MSX1P28360 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.44■□□□□ 0.38
MSX1P28360 AP000692.2-201ENST00000608391 879 ntBASIC17.44■□□□□ 0.38
MSX1P28360 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.44■□□□□ 0.38
MSX1P28360 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
MSX1P28360 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.44■□□□□ 0.38
MSX1P28360 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSX1P28360 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.44■□□□□ 0.38
MSX1P28360 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
MSX1P28360 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC17.44■□□□□ 0.38
MSX1P28360 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.44■□□□□ 0.38
MSX1P28360 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSX1P28360 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
MSX1P28360 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.44■□□□□ 0.38
MSX1P28360 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.43■□□□□ 0.38
MSX1P28360 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSX1P28360 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.43■□□□□ 0.38
MSX1P28360 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
MSX1P28360 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSX1P28360 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSX1P28360 MESTP1-201ENST00000404287 994 ntBASIC17.43■□□□□ 0.38
MSX1P28360 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
MSX1P28360 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.43■□□□□ 0.38
MSX1P28360 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.43■□□□□ 0.38
MSX1P28360 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
MSX1P28360 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.43■□□□□ 0.38
MSX1P28360 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.43■□□□□ 0.38
MSX1P28360 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.43■□□□□ 0.38
MSX1P28360 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.43■□□□□ 0.38
MSX1P28360 AC116562.4-201ENST00000641316 2276 ntBASIC17.43■□□□□ 0.38
MSX1P28360 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
MSX1P28360 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSX1P28360 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSX1P28360 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSX1P28360 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
MSX1P28360 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
MSX1P28360 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSX1P28360 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSX1P28360 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSX1P28360 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.42■□□□□ 0.38
MSX1P28360 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.42■□□□□ 0.38
MSX1P28360 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
MSX1P28360 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSX1P28360 AC007952.6-201ENST00000573168 2673 ntBASIC17.42■□□□□ 0.38
MSX1P28360 AC003957.1-201ENST00000625108 2673 ntBASIC17.42■□□□□ 0.38
MSX1P28360 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSX1P28360 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSX1P28360 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSX1P28360 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSX1P28360 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.42■□□□□ 0.38
MSX1P28360 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
MSX1P28360 AL390955.1-201ENST00000428694 934 ntBASIC17.42■□□□□ 0.38
MSX1P28360 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.42■□□□□ 0.38
MSX1P28360 KRT18P57-201ENST00000443599 1254 ntBASIC17.42■□□□□ 0.38
MSX1P28360 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSX1P28360 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.42■□□□□ 0.38
MSX1P28360 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.42■□□□□ 0.38
MSX1P28360 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSX1P28360 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSX1P28360 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSX1P28360 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSX1P28360 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
MSX1P28360 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.42■□□□□ 0.38
MSX1P28360 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSX1P28360 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSX1P28360 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MSX1P28360 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSX1P28360 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSX1P28360 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
MSX1P28360 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSX1P28360 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MSX1P28360 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
MSX1P28360 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MSX1P28360 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms