Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.95■□□□□ 0.62
MSH3P20585 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.95■□□□□ 0.62
MSH3P20585 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSH3P20585 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSH3P20585 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
MSH3P20585 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSH3P20585 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.94■□□□□ 0.62
MSH3P20585 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSH3P20585 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
MSH3P20585 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSH3P20585 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSH3P20585 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.94■□□□□ 0.62
MSH3P20585 UNC93B2-201ENST00000285383 730 ntBASIC18.94■□□□□ 0.62
MSH3P20585 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
MSH3P20585 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.94■□□□□ 0.62
MSH3P20585 AC008040.2-201ENST00000461049 708 ntBASIC18.94■□□□□ 0.62
MSH3P20585 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.94■□□□□ 0.62
MSH3P20585 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
MSH3P20585 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSH3P20585 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.94■□□□□ 0.62
MSH3P20585 DGCR10-201ENST00000609839 495 ntBASIC18.94■□□□□ 0.62
MSH3P20585 AP000974.1-201ENST00000623909 2387 ntBASIC18.94■□□□□ 0.62
MSH3P20585 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSH3P20585 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSH3P20585 TEX21P-204ENST00000641479 1693 ntBASIC18.94■□□□□ 0.62
MSH3P20585 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.94■□□□□ 0.62
MSH3P20585 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.94■□□□□ 0.62
MSH3P20585 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.94■□□□□ 0.62
MSH3P20585 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
MSH3P20585 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSH3P20585 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSH3P20585 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSH3P20585 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH3P20585 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
MSH3P20585 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH3P20585 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH3P20585 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
MSH3P20585 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH3P20585 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.93■□□□□ 0.62
MSH3P20585 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH3P20585 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
MSH3P20585 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH3P20585 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH3P20585 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.93■□□□□ 0.62
MSH3P20585 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH3P20585 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
MSH3P20585 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.93■□□□□ 0.62
MSH3P20585 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.93■□□□□ 0.62
MSH3P20585 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.93■□□□□ 0.62
MSH3P20585 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.93■□□□□ 0.62
MSH3P20585 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.93■□□□□ 0.62
MSH3P20585 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
MSH3P20585 AL355075.4-201ENST00000554988 638 ntBASIC18.93■□□□□ 0.62
MSH3P20585 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.93■□□□□ 0.62
MSH3P20585 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.93■□□□□ 0.62
MSH3P20585 AP000692.2-201ENST00000608391 879 ntBASIC18.93■□□□□ 0.62
MSH3P20585 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH3P20585 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH3P20585 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH3P20585 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH3P20585 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSH3P20585 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.93■□□□□ 0.62
MSH3P20585 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
MSH3P20585 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSH3P20585 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
MSH3P20585 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSH3P20585 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
MSH3P20585 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSH3P20585 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.92■□□□□ 0.62
MSH3P20585 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.92■□□□□ 0.62
MSH3P20585 AC120498.9-201ENST00000339021 3867 ntBASIC18.92■□□□□ 0.62
MSH3P20585 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSH3P20585 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSH3P20585 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSH3P20585 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
MSH3P20585 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
MSH3P20585 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.92■□□□□ 0.62
MSH3P20585 RBM17P1-201ENST00000453646 1190 ntBASIC18.92■□□□□ 0.62
MSH3P20585 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
MSH3P20585 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.92■□□□□ 0.62
MSH3P20585 SLC25A1P4-201ENST00000567977 778 ntBASIC18.92■□□□□ 0.62
MSH3P20585 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.92■□□□□ 0.62
MSH3P20585 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.92■□□□□ 0.62
MSH3P20585 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSH3P20585 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSH3P20585 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSH3P20585 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
MSH3P20585 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSH3P20585 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.92■□□□□ 0.62
MSH3P20585 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.92■□□□□ 0.62
MSH3P20585 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
MSH3P20585 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSH3P20585 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
MSH3P20585 TNXA-203ENST00000507684 2038 ntBASIC18.91■□□□□ 0.62
MSH3P20585 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSH3P20585 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.91■□□□□ 0.62
MSH3P20585 AC141586.3-201ENST00000562166 1838 ntBASIC18.91■□□□□ 0.62
MSH3P20585 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
MSH3P20585 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
MSH3P20585 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms