Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC22.48■■□□□ 1.19
HMGB1P09429 AC233702.5-201ENST00000584107 538 ntBASIC22.48■■□□□ 1.19
HMGB1P09429 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
HMGB1P09429 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
HMGB1P09429 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
HMGB1P09429 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC22.48■■□□□ 1.19
HMGB1P09429 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC22.48■■□□□ 1.19
HMGB1P09429 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
HMGB1P09429 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
HMGB1P09429 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
HMGB1P09429 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
HMGB1P09429 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
HMGB1P09429 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC22.47■■□□□ 1.19
HMGB1P09429 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC22.47■■□□□ 1.19
HMGB1P09429 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
HMGB1P09429 AC093525.10-201ENST00000625130 1569 ntBASIC22.47■■□□□ 1.19
HMGB1P09429 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC22.47■■□□□ 1.19
HMGB1P09429 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
HMGB1P09429 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
HMGB1P09429 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC22.47■■□□□ 1.19
HMGB1P09429 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC22.47■■□□□ 1.19
HMGB1P09429 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
HMGB1P09429 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC22.47■■□□□ 1.19
HMGB1P09429 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC22.47■■□□□ 1.19
HMGB1P09429 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
HMGB1P09429 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC22.47■■□□□ 1.19
HMGB1P09429 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC22.47■■□□□ 1.19
HMGB1P09429 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC22.47■■□□□ 1.19
HMGB1P09429 AC083906.6-201ENST00000641366 219 ntBASIC22.47■■□□□ 1.19
HMGB1P09429 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
HMGB1P09429 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC22.47■■□□□ 1.19
HMGB1P09429 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC22.47■■□□□ 1.19
HMGB1P09429 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC22.47■■□□□ 1.19
HMGB1P09429 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
HMGB1P09429 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC22.47■■□□□ 1.19
HMGB1P09429 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
HMGB1P09429 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC22.47■■□□□ 1.19
HMGB1P09429 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
HMGB1P09429 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
HMGB1P09429 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
HMGB1P09429 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
HMGB1P09429 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
HMGB1P09429 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
HMGB1P09429 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
HMGB1P09429 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
HMGB1P09429 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC22.46■■□□□ 1.19
HMGB1P09429 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC22.46■■□□□ 1.19
HMGB1P09429 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
HMGB1P09429 FAM207BP-201ENST00000447172 505 ntBASIC22.46■■□□□ 1.19
HMGB1P09429 AC011506.1-201ENST00000474329 610 ntBASIC22.46■■□□□ 1.19
HMGB1P09429 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
HMGB1P09429 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC22.46■■□□□ 1.19
HMGB1P09429 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC22.46■■□□□ 1.19
HMGB1P09429 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC22.46■■□□□ 1.19
HMGB1P09429 TMEM191A-211ENST00000637163 1067 ntBASIC22.46■■□□□ 1.19
HMGB1P09429 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC22.46■■□□□ 1.19
HMGB1P09429 MME-217ENST00000616757 1315 ntTSL 5 BASIC22.46■■□□□ 1.19
HMGB1P09429 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
HMGB1P09429 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC22.46■■□□□ 1.19
HMGB1P09429 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
HMGB1P09429 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
HMGB1P09429 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC22.46■■□□□ 1.19
HMGB1P09429 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
HMGB1P09429 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC22.46■■□□□ 1.19
HMGB1P09429 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
HMGB1P09429 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.19
HMGB1P09429 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
HMGB1P09429 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
HMGB1P09429 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
HMGB1P09429 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC22.45■■□□□ 1.18
HMGB1P09429 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
HMGB1P09429 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC22.45■■□□□ 1.18
HMGB1P09429 BAALC-201ENST00000297574 801 ntTSL 3 BASIC22.45■■□□□ 1.18
HMGB1P09429 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
HMGB1P09429 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC22.45■■□□□ 1.18
HMGB1P09429 AC008040.2-201ENST00000461049 708 ntBASIC22.45■■□□□ 1.18
HMGB1P09429 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
HMGB1P09429 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
HMGB1P09429 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC22.45■■□□□ 1.18
HMGB1P09429 AC120498.9-201ENST00000339021 3867 ntBASIC22.45■■□□□ 1.18
HMGB1P09429 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC22.45■■□□□ 1.18
HMGB1P09429 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
HMGB1P09429 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC22.45■■□□□ 1.18
HMGB1P09429 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
HMGB1P09429 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
HMGB1P09429 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC22.45■■□□□ 1.18
HMGB1P09429 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC22.45■■□□□ 1.18
HMGB1P09429 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
HMGB1P09429 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
HMGB1P09429 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
HMGB1P09429 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
HMGB1P09429 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC22.44■■□□□ 1.18
HMGB1P09429 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
HMGB1P09429 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
HMGB1P09429 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
HMGB1P09429 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC22.44■■□□□ 1.18
HMGB1P09429 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
HMGB1P09429 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
HMGB1P09429 MESTP1-201ENST00000404287 994 ntBASIC22.44■■□□□ 1.18
HMGB1P09429 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC22.44■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms