Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
MMP3P08254 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
MMP3P08254 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC21.09■□□□□ 0.97
MMP3P08254 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MMP3P08254 AL645929.1-201ENST00000420084 975 ntBASIC21.09■□□□□ 0.97
MMP3P08254 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC21.09■□□□□ 0.97
MMP3P08254 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MMP3P08254 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.09■□□□□ 0.97
MMP3P08254 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC21.09■□□□□ 0.97
MMP3P08254 CLEC4GP1-201ENST00000596555 870 ntBASIC21.09■□□□□ 0.97
MMP3P08254 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MMP3P08254 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
MMP3P08254 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MMP3P08254 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MMP3P08254 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MMP3P08254 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MMP3P08254 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
MMP3P08254 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.09■□□□□ 0.97
MMP3P08254 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MMP3P08254 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MMP3P08254 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC21.08■□□□□ 0.97
MMP3P08254 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MMP3P08254 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC21.08■□□□□ 0.97
MMP3P08254 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MMP3P08254 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MMP3P08254 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
MMP3P08254 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC21.08■□□□□ 0.97
MMP3P08254 ATP5G2P1-201ENST00000433580 426 ntBASIC21.08■□□□□ 0.97
MMP3P08254 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC21.08■□□□□ 0.97
MMP3P08254 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
MMP3P08254 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MMP3P08254 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC21.08■□□□□ 0.97
MMP3P08254 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
MMP3P08254 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.08■□□□□ 0.96
MMP3P08254 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.08■□□□□ 0.96
MMP3P08254 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
MMP3P08254 LINC01521-201ENST00000504184 1943 ntBASIC21.08■□□□□ 0.96
MMP3P08254 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC21.08■□□□□ 0.96
MMP3P08254 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MMP3P08254 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
MMP3P08254 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.07■□□□□ 0.96
MMP3P08254 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MMP3P08254 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC21.07■□□□□ 0.96
MMP3P08254 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC21.07■□□□□ 0.96
MMP3P08254 SEC1P-202ENST00000473944 940 ntBASIC21.07■□□□□ 0.96
MMP3P08254 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC21.07■□□□□ 0.96
MMP3P08254 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
MMP3P08254 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.07■□□□□ 0.96
MMP3P08254 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MMP3P08254 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC21.07■□□□□ 0.96
MMP3P08254 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MMP3P08254 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
MMP3P08254 CLDN5-201ENST00000403084 2357 ntBASIC21.07■□□□□ 0.96
MMP3P08254 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
MMP3P08254 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC21.07■□□□□ 0.96
MMP3P08254 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
MMP3P08254 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MMP3P08254 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MMP3P08254 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC21.06■□□□□ 0.96
MMP3P08254 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MMP3P08254 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.06■□□□□ 0.96
MMP3P08254 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
MMP3P08254 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MMP3P08254 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
MMP3P08254 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
MMP3P08254 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MMP3P08254 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MMP3P08254 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.06■□□□□ 0.96
MMP3P08254 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC21.06■□□□□ 0.96
MMP3P08254 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MMP3P08254 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MMP3P08254 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MMP3P08254 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC21.06■□□□□ 0.96
MMP3P08254 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MMP3P08254 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MMP3P08254 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MMP3P08254 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MMP3P08254 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC21.06■□□□□ 0.96
MMP3P08254 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC21.06■□□□□ 0.96
MMP3P08254 BCL10-202ENST00000620248 774 ntTSL 5 BASIC21.06■□□□□ 0.96
MMP3P08254 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
MMP3P08254 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.06■□□□□ 0.96
MMP3P08254 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.06■□□□□ 0.96
MMP3P08254 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
MMP3P08254 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
MMP3P08254 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
MMP3P08254 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MMP3P08254 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MMP3P08254 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MMP3P08254 AL450487.1-201ENST00000426799 995 ntBASIC21.05■□□□□ 0.96
MMP3P08254 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC21.05■□□□□ 0.96
MMP3P08254 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC21.05■□□□□ 0.96
MMP3P08254 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MMP3P08254 NPAP1P7-201ENST00000613027 823 ntBASIC21.05■□□□□ 0.96
MMP3P08254 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC21.05■□□□□ 0.96
MMP3P08254 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MMP3P08254 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.05■□□□□ 0.96
MMP3P08254 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MMP3P08254 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
MMP3P08254 TEX21P-204ENST00000641479 1693 ntBASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms