Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.61■□□□□ 0.57
TNFP01375 AC009947.2-201ENST00000444014 672 ntBASIC18.61■□□□□ 0.57
TNFP01375 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.61■□□□□ 0.57
TNFP01375 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TNFP01375 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TNFP01375 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.61■□□□□ 0.57
TNFP01375 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.61■□□□□ 0.57
TNFP01375 NEK4P2-201ENST00000580004 1012 ntBASIC18.61■□□□□ 0.57
TNFP01375 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.61■□□□□ 0.57
TNFP01375 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
TNFP01375 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TNFP01375 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TNFP01375 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
TNFP01375 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.6■□□□□ 0.57
TNFP01375 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TNFP01375 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TNFP01375 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TNFP01375 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TNFP01375 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.6■□□□□ 0.57
TNFP01375 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TNFP01375 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TNFP01375 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TNFP01375 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
TNFP01375 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.6■□□□□ 0.57
TNFP01375 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.6■□□□□ 0.57
TNFP01375 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.6■□□□□ 0.57
TNFP01375 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.6■□□□□ 0.57
TNFP01375 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.6■□□□□ 0.57
TNFP01375 AL441883.1-201ENST00000566170 1045 ntBASIC18.6■□□□□ 0.57
TNFP01375 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
TNFP01375 AC008622.2-201ENST00000617006 1229 ntBASIC18.6■□□□□ 0.57
TNFP01375 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TNFP01375 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TNFP01375 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
TNFP01375 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.6■□□□□ 0.57
TNFP01375 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TNFP01375 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TNFP01375 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TNFP01375 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.6■□□□□ 0.57
TNFP01375 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.6■□□□□ 0.57
TNFP01375 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
TNFP01375 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TNFP01375 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.6■□□□□ 0.57
TNFP01375 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TNFP01375 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.59■□□□□ 0.57
TNFP01375 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.59■□□□□ 0.57
TNFP01375 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
TNFP01375 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.59■□□□□ 0.57
TNFP01375 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TNFP01375 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TNFP01375 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TNFP01375 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.59■□□□□ 0.57
TNFP01375 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.59■□□□□ 0.57
TNFP01375 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.59■□□□□ 0.57
TNFP01375 MIR4674-201ENST00000582457 87 ntBASIC18.59■□□□□ 0.57
TNFP01375 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TNFP01375 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.59■□□□□ 0.57
TNFP01375 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
TNFP01375 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TNFP01375 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.59■□□□□ 0.57
TNFP01375 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TNFP01375 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
TNFP01375 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TNFP01375 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TNFP01375 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
TNFP01375 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TNFP01375 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TNFP01375 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TNFP01375 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.57
TNFP01375 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TNFP01375 AC125437.2-201ENST00000625180 2167 ntBASIC18.58■□□□□ 0.57
TNFP01375 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
TNFP01375 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TNFP01375 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
TNFP01375 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TNFP01375 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.58■□□□□ 0.56
TNFP01375 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TNFP01375 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TNFP01375 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.58■□□□□ 0.56
TNFP01375 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
TNFP01375 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.58■□□□□ 0.56
TNFP01375 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.58■□□□□ 0.56
TNFP01375 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.58■□□□□ 0.56
TNFP01375 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.58■□□□□ 0.56
TNFP01375 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.58■□□□□ 0.56
TNFP01375 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.58■□□□□ 0.56
TNFP01375 CR769767.2-201ENST00000622735 460 ntBASIC18.58■□□□□ 0.56
TNFP01375 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.58■□□□□ 0.56
TNFP01375 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.58■□□□□ 0.56
TNFP01375 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TNFP01375 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.58■□□□□ 0.56
TNFP01375 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TNFP01375 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TNFP01375 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TNFP01375 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.58■□□□□ 0.56
TNFP01375 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TNFP01375 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TNFP01375 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TNFP01375 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TNFP01375 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms