Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SDC3O75056 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SDC3O75056 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.61■□□□□ 0.57
SDC3O75056 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SDC3O75056 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SDC3O75056 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SDC3O75056 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SDC3O75056 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SDC3O75056 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
SDC3O75056 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC18.61■□□□□ 0.57
SDC3O75056 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.61■□□□□ 0.57
SDC3O75056 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SDC3O75056 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SDC3O75056 KRT126P-201ENST00000549467 1181 ntBASIC18.61■□□□□ 0.57
SDC3O75056 AC069148.1-201ENST00000608741 768 ntBASIC18.61■□□□□ 0.57
SDC3O75056 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SDC3O75056 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
SDC3O75056 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SDC3O75056 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.61■□□□□ 0.57
SDC3O75056 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SDC3O75056 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SDC3O75056 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SDC3O75056 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SDC3O75056 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.6■□□□□ 0.57
SDC3O75056 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SDC3O75056 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
SDC3O75056 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SDC3O75056 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SDC3O75056 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.6■□□□□ 0.57
SDC3O75056 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SDC3O75056 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SDC3O75056 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.6■□□□□ 0.57
SDC3O75056 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SDC3O75056 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.6■□□□□ 0.57
SDC3O75056 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SDC3O75056 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.6■□□□□ 0.57
SDC3O75056 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SDC3O75056 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.6■□□□□ 0.57
SDC3O75056 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
SDC3O75056 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SDC3O75056 STARP1-201ENST00000397973 869 ntBASIC18.6■□□□□ 0.57
SDC3O75056 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.6■□□□□ 0.57
SDC3O75056 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
SDC3O75056 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SDC3O75056 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.6■□□□□ 0.57
SDC3O75056 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.6■□□□□ 0.57
SDC3O75056 AL136038.3-201ENST00000561909 1096 ntBASIC18.6■□□□□ 0.57
SDC3O75056 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.6■□□□□ 0.57
SDC3O75056 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SDC3O75056 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
SDC3O75056 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SDC3O75056 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SDC3O75056 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SDC3O75056 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SDC3O75056 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SDC3O75056 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.6■□□□□ 0.57
SDC3O75056 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SDC3O75056 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SDC3O75056 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.59■□□□□ 0.57
SDC3O75056 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SDC3O75056 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
SDC3O75056 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.59■□□□□ 0.57
SDC3O75056 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SDC3O75056 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SDC3O75056 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SDC3O75056 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC18.59■□□□□ 0.57
SDC3O75056 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.59■□□□□ 0.57
SDC3O75056 HYMAI.1-201ENST00000620949 238 ntBASIC18.59■□□□□ 0.57
SDC3O75056 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.59■□□□□ 0.57
SDC3O75056 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SDC3O75056 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SDC3O75056 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SDC3O75056 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SDC3O75056 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.59■□□□□ 0.57
SDC3O75056 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.59■□□□□ 0.57
SDC3O75056 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SDC3O75056 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SDC3O75056 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.59■□□□□ 0.57
SDC3O75056 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
SDC3O75056 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SDC3O75056 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SDC3O75056 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.58■□□□□ 0.57
SDC3O75056 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SDC3O75056 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SDC3O75056 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SDC3O75056 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SDC3O75056 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SDC3O75056 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SDC3O75056 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.58■□□□□ 0.57
SDC3O75056 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SDC3O75056 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
SDC3O75056 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SDC3O75056 DUSP5P1-201ENST00000441325 1139 ntBASIC18.58■□□□□ 0.56
SDC3O75056 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SDC3O75056 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.58■□□□□ 0.56
SDC3O75056 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.58■□□□□ 0.56
SDC3O75056 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.58■□□□□ 0.56
SDC3O75056 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SDC3O75056 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SDC3O75056 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms