Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
LMX1BO60663 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1BO60663 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1BO60663 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC16.75■□□□□ 0.27
LMX1BO60663 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC16.74■□□□□ 0.27
LMX1BO60663 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
LMX1BO60663 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1BO60663 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC16.74■□□□□ 0.27
LMX1BO60663 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1BO60663 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1BO60663 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1BO60663 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1BO60663 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1BO60663 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1BO60663 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
LMX1BO60663 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.74■□□□□ 0.27
LMX1BO60663 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1BO60663 AC087499.1-201ENST00000418141 1075 ntBASIC16.74■□□□□ 0.27
LMX1BO60663 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC16.74■□□□□ 0.27
LMX1BO60663 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC16.74■□□□□ 0.27
LMX1BO60663 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1BO60663 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1BO60663 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC16.74■□□□□ 0.27
LMX1BO60663 PRKY-204ENST00000533551 1019 ntBASIC16.74■□□□□ 0.27
LMX1BO60663 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC16.74■□□□□ 0.27
LMX1BO60663 PNN-205ENST00000556530 601 ntTSL 2 BASIC16.74■□□□□ 0.27
LMX1BO60663 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC16.74■□□□□ 0.27
LMX1BO60663 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC16.74■□□□□ 0.27
LMX1BO60663 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1BO60663 AP006587.1-201ENST00000534129 1502 ntBASIC16.74■□□□□ 0.27
LMX1BO60663 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
LMX1BO60663 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1BO60663 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
LMX1BO60663 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
LMX1BO60663 AC007613.1-201ENST00000572811 2597 ntBASIC16.74■□□□□ 0.27
LMX1BO60663 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC16.74■□□□□ 0.27
LMX1BO60663 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.74■□□□□ 0.27
LMX1BO60663 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1BO60663 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.73■□□□□ 0.27
LMX1BO60663 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1BO60663 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1BO60663 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
LMX1BO60663 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1BO60663 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1BO60663 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC16.73■□□□□ 0.27
LMX1BO60663 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1BO60663 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1BO60663 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC16.73■□□□□ 0.27
LMX1BO60663 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC16.73■□□□□ 0.27
LMX1BO60663 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC16.73■□□□□ 0.27
LMX1BO60663 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1BO60663 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC16.73■□□□□ 0.27
LMX1BO60663 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1BO60663 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1BO60663 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.73■□□□□ 0.27
LMX1BO60663 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1BO60663 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1BO60663 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
LMX1BO60663 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1BO60663 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.73■□□□□ 0.27
LMX1BO60663 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1BO60663 MAX-217ENST00000557277 728 ntTSL 3 BASIC16.73■□□□□ 0.27
LMX1BO60663 RARRES2P10-201ENST00000564312 460 ntBASIC16.73■□□□□ 0.27
LMX1BO60663 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC16.73■□□□□ 0.27
LMX1BO60663 AC113410.3-201ENST00000623366 203 ntBASIC16.73■□□□□ 0.27
LMX1BO60663 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1BO60663 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.73■□□□□ 0.27
LMX1BO60663 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC16.73■□□□□ 0.27
LMX1BO60663 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.73■□□□□ 0.27
LMX1BO60663 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1BO60663 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1BO60663 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1BO60663 ANKRD18DP-204ENST00000455355 1975 ntBASIC16.73■□□□□ 0.27
LMX1BO60663 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1BO60663 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1BO60663 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC16.72■□□□□ 0.27
LMX1BO60663 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC16.72■□□□□ 0.27
LMX1BO60663 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC16.72■□□□□ 0.27
LMX1BO60663 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1BO60663 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1BO60663 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC16.72■□□□□ 0.27
LMX1BO60663 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1BO60663 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1BO60663 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1BO60663 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1BO60663 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
LMX1BO60663 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1BO60663 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1BO60663 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1BO60663 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC16.72■□□□□ 0.27
LMX1BO60663 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC16.72■□□□□ 0.27
LMX1BO60663 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1BO60663 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1BO60663 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1BO60663 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1BO60663 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1BO60663 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1BO60663 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1BO60663 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1BO60663 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms